Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31210 * 1 3 3 Si 1.86805 * 119.99606 * 2 1 4 4 H 1.48505 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47379 * 300.00057 * 3 2 1 6 6 H 1.48498 * 109.47122 * 60.00128 * 3 2 1 7 7 C 1.39065 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 179.97438 * 7 2 1 9 9 N 1.37481 * 119.99742 * 0.02562 * 7 2 1 10 10 N 1.40169 * 126.57027 * 359.97198 * 9 7 2 11 11 N 1.28688 * 108.72594 * 179.97438 * 10 9 7 12 12 C 1.34726 * 109.68711 * 0.02562 * 11 10 9 13 13 C 1.46719 * 125.90649 * 179.73633 * 12 11 10 14 14 O 1.21313 * 120.00516 * 354.83814 * 13 12 11 15 15 C 1.35434 * 126.57268 * 179.97438 * 9 7 2 16 16 C 1.50704 * 126.72253 * 0.05806 * 15 9 7 17 17 C 1.53009 * 117.49667 * 132.32781 * 16 15 9 18 18 C 1.53001 * 60.00127 * 252.50847 * 17 16 15 19 19 H 0.96993 * 120.00205 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.99934 * 174.84632 * 13 12 11 21 21 H 1.08998 * 115.55344 * 278.03137 * 16 15 9 22 22 H 1.08999 * 117.49476 * 359.97438 * 17 16 15 23 23 H 1.09002 * 117.49630 * 145.01577 * 17 16 15 24 24 H 1.08993 * 117.49854 * 252.51584 * 18 17 16 25 25 H 1.08997 * 117.49844 * 107.48580 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 3.7061 1.3465 0.0006 5 1 1.8872 2.3966 -1.2124 6 1 1.8872 2.3965 1.2125 7 6 2.0075 -1.2043 0.0005 8 1 3.0875 -1.2042 0.0001 9 7 1.3202 -2.3949 0.0005 10 7 -0.0723 -2.5554 0.0006 11 7 -0.3432 -3.8134 0.0000 12 6 0.8013 -4.5242 0.0002 13 6 0.9054 -5.9876 0.0051 14 8 -0.0950 -6.6666 0.1041 15 6 1.8587 -3.6376 0.0005 16 6 3.3254 -3.9841 0.0018 17 6 3.8018 -5.0364 1.0052 18 6 4.1501 -3.5620 1.2195 19 1 -0.4850 0.8400 -0.0004 20 1 1.8727 -6.4605 -0.0792 21 1 3.8155 -3.9581 -0.9715 22 1 3.0545 -5.4776 1.6647 23 1 4.6054 -5.7030 0.6920 24 1 5.1827 -3.2586 1.0473 25 1 3.6318 -3.0336 2.0196 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295559.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = 73.115225 kcal Electronic energy + Delta-G solvation = -13129.179681 eV Core-core repulsion = 10724.712700 eV Total energy + Delta-G solvation = -2404.466981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45093 -37.63264 -36.57117 -34.30066 -31.57008 -29.38040 -26.07998 -23.79643 -22.70254 -21.81135 -20.66828 -19.05710 -17.52081 -15.90403 -15.49119 -15.20849 -14.58655 -14.28598 -13.83738 -13.46865 -12.88401 -12.17904 -11.89829 -11.60175 -11.52277 -11.19469 -10.73525 -10.47103 -10.20339 -10.12583 -9.97402 -9.32714 -8.90441 -8.88155 -7.59117 -7.03107 -4.85044 2.22026 2.76640 2.84605 2.93113 3.21891 3.51582 4.02884 4.31724 4.39669 4.61468 5.10646 5.22131 5.32333 5.35221 5.89903 5.95533 6.11436 6.18061 6.40113 6.46519 6.57857 6.66266 6.83515 7.38224 7.69305 8.24539 8.36649 8.85910 9.89738 9.94127 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.037344 B = 0.011827 C = 0.009186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.608488 B = 2366.866601 C = 3047.410930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.046 3.954 3 Si 0.945 3.055 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.129 0.871 9 N -0.129 5.129 10 N -0.087 5.087 11 N -0.259 5.259 12 C -0.170 4.170 13 C 0.424 3.576 14 O -0.490 6.490 15 C -0.031 4.031 16 C -0.062 4.062 17 C -0.172 4.172 18 C -0.170 4.170 19 H 0.287 0.713 20 H 0.095 0.905 21 H 0.111 0.889 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -0.647 0.610 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.146 0.854 9 N 0.107 4.893 10 N -0.066 5.066 11 N -0.124 5.124 12 C -0.315 4.315 13 C 0.284 3.716 14 O -0.363 6.363 15 C -0.172 4.172 16 C -0.083 4.083 17 C -0.210 4.210 18 C -0.207 4.207 19 H 0.098 0.902 20 H 0.111 0.889 21 H 0.128 0.872 22 H 0.112 0.888 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.272 -0.195 0.661 8.301 hybrid contribution 1.461 0.618 -0.051 1.587 sum 9.733 0.423 0.610 9.761 Atomic orbital electron populations 1.70127 1.06618 1.29644 1.30896 1.25915 0.95854 1.01217 0.94605 0.85583 0.79815 0.78880 0.79011 1.18054 1.19342 1.19354 1.20402 0.92638 0.80226 1.50649 0.85382 1.46344 1.06876 1.04417 1.31689 1.82599 0.88013 1.07353 1.28605 1.74542 1.24835 1.00207 1.12781 1.21716 0.89190 0.96528 1.24046 1.22805 0.92491 0.86024 0.70325 1.90443 1.41841 1.66250 1.37777 1.20506 0.93483 0.85490 1.17689 1.19971 0.89257 1.04178 0.94852 1.22999 1.03088 0.92207 1.02709 1.22919 1.00040 0.97266 1.00486 0.90248 0.88854 0.87155 0.88759 0.88489 0.88795 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.35 11.86 55.50 0.66 -18.69 15 2 C 0.05 1.07 5.50 -17.51 -0.10 0.97 15 3 Si 0.94 17.00 29.55 -169.99 -5.02 11.97 15 4 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 7 C -0.30 -7.30 10.06 -14.71 -0.15 -7.44 15 8 H 0.13 2.73 7.43 -52.49 -0.39 2.34 15 9 N -0.13 -3.36 3.73 -7.36 -0.03 -3.39 15 10 N -0.09 -2.55 11.64 60.35 0.70 -1.85 15 11 N -0.26 -7.37 12.37 32.97 0.41 -6.96 15 12 C -0.17 -4.15 7.01 -83.26 -0.58 -4.73 15 13 C 0.42 8.80 10.70 34.16 0.37 9.17 15 14 O -0.49 -11.72 17.91 5.53 0.10 -11.62 15 15 C -0.03 -0.71 6.49 -81.09 -0.53 -1.24 15 16 C -0.06 -1.05 5.57 -91.76 -0.51 -1.56 15 17 C -0.17 -2.33 8.89 -26.73 -0.24 -2.57 15 18 C -0.17 -2.50 10.06 -26.73 -0.27 -2.77 15 19 H 0.29 6.65 8.30 -40.82 -0.34 6.31 15 20 H 0.10 1.47 7.00 -52.48 -0.37 1.10 15 21 H 0.11 1.68 8.14 -51.93 -0.42 1.25 15 22 H 0.09 1.35 7.64 -51.93 -0.40 0.95 15 23 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 LS Contribution 235.59 15.07 3.55 3.55 Total: -1.00 -31.87 235.59 -3.62 -35.49 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -1.98 Total: 1.67 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.01 Total: -10.17 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 1.74 Total: -30.89 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.10 Total: -11.62 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.02 Total: 11.97 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.87 -3.62 -35.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295559.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.606 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds