Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31210 * 1 3 3 Si 1.86805 * 119.99606 * 2 1 4 4 H 1.48505 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47379 * 300.00057 * 3 2 1 6 6 H 1.48498 * 109.47122 * 60.00128 * 3 2 1 7 7 C 1.39065 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 179.97438 * 7 2 1 9 9 N 1.37481 * 119.99742 * 0.02562 * 7 2 1 10 10 N 1.40169 * 126.57027 * 359.97198 * 9 7 2 11 11 N 1.28688 * 108.72594 * 179.97438 * 10 9 7 12 12 C 1.34726 * 109.68711 * 0.02562 * 11 10 9 13 13 C 1.46719 * 125.90649 * 179.73633 * 12 11 10 14 14 O 1.21313 * 120.00516 * 354.83814 * 13 12 11 15 15 C 1.35434 * 126.57268 * 179.97438 * 9 7 2 16 16 C 1.50704 * 126.72253 * 0.05806 * 15 9 7 17 17 C 1.53009 * 117.49667 * 132.32781 * 16 15 9 18 18 C 1.53001 * 60.00127 * 252.50847 * 17 16 15 19 19 H 0.96993 * 120.00205 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.99934 * 174.84632 * 13 12 11 21 21 H 1.08998 * 115.55344 * 278.03137 * 16 15 9 22 22 H 1.08999 * 117.49476 * 359.97438 * 17 16 15 23 23 H 1.09002 * 117.49630 * 145.01577 * 17 16 15 24 24 H 1.08993 * 117.49854 * 252.51584 * 18 17 16 25 25 H 1.08997 * 117.49844 * 107.48580 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 3.7061 1.3465 0.0006 5 1 1.8872 2.3966 -1.2124 6 1 1.8872 2.3965 1.2125 7 6 2.0075 -1.2043 0.0005 8 1 3.0875 -1.2042 0.0001 9 7 1.3202 -2.3949 0.0005 10 7 -0.0723 -2.5554 0.0006 11 7 -0.3432 -3.8134 0.0000 12 6 0.8013 -4.5242 0.0002 13 6 0.9054 -5.9876 0.0051 14 8 -0.0950 -6.6666 0.1041 15 6 1.8587 -3.6376 0.0005 16 6 3.3254 -3.9841 0.0018 17 6 3.8018 -5.0364 1.0052 18 6 4.1501 -3.5620 1.2195 19 1 -0.4850 0.8400 -0.0004 20 1 1.8727 -6.4605 -0.0792 21 1 3.8155 -3.9581 -0.9715 22 1 3.0545 -5.4776 1.6647 23 1 4.6054 -5.7030 0.6920 24 1 5.1827 -3.2586 1.0473 25 1 3.6318 -3.0336 2.0196 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295559.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = 50.276483 kcal Electronic energy + Delta-G solvation = -13130.170043 eV Core-core repulsion = 10724.712700 eV Total energy + Delta-G solvation = -2405.457344 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.30822 -39.43093 -37.84018 -36.11585 -33.43972 -31.18918 -27.92297 -25.48045 -24.33718 -22.98010 -22.41830 -20.73112 -19.29604 -17.56830 -17.17006 -16.75684 -16.18618 -16.00346 -15.25849 -15.07358 -14.70407 -13.85505 -13.51099 -13.21423 -13.08699 -12.25258 -12.08895 -12.04832 -11.94271 -11.69496 -11.37775 -10.93896 -10.71992 -10.62211 -9.46254 -8.78882 -6.74281 0.52552 1.08552 1.36387 1.59262 1.60675 1.99517 2.48558 2.50924 2.85986 3.03326 3.53633 3.92379 4.07628 4.18019 4.38180 4.60689 4.70161 4.89720 4.91524 5.07773 5.11505 5.31918 5.41545 5.58997 5.87486 6.46342 6.66282 7.05160 7.96330 8.21337 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.037344 B = 0.011827 C = 0.009186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.608488 B = 2366.866601 C = 3047.410930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C -0.003 4.003 3 Si 1.028 2.972 4 H -0.231 1.231 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.324 4.324 8 H 0.156 0.844 9 N -0.147 5.147 10 N -0.146 5.146 11 N -0.311 5.311 12 C -0.188 4.188 13 C 0.438 3.562 14 O -0.523 6.523 15 C -0.022 4.022 16 C -0.090 4.090 17 C -0.145 4.145 18 C -0.165 4.165 19 H 0.290 0.710 20 H 0.165 0.835 21 H 0.135 0.865 22 H 0.084 0.916 23 H 0.142 0.858 24 H 0.128 0.872 25 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.327 -1.028 0.594 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.219 4.219 3 Si 0.844 3.156 4 H -0.153 1.153 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.460 4.460 8 H 0.174 0.826 9 N 0.088 4.912 10 N -0.123 5.123 11 N -0.175 5.175 12 C -0.334 4.334 13 C 0.298 3.702 14 O -0.397 6.397 15 C -0.162 4.162 16 C -0.110 4.110 17 C -0.182 4.182 18 C -0.202 4.202 19 H 0.101 0.899 20 H 0.180 0.820 21 H 0.152 0.848 22 H 0.103 0.897 23 H 0.160 0.840 24 H 0.146 0.854 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.061 -0.607 0.647 12.094 hybrid contribution 0.325 0.634 -0.028 0.713 sum 12.386 0.027 0.618 12.402 Atomic orbital electron populations 1.70287 1.09047 1.30957 1.32691 1.27246 0.96475 1.05220 0.92924 0.84416 0.79491 0.73009 0.78676 1.15259 1.19282 1.19339 1.21189 0.93931 0.80169 1.50732 0.82643 1.46666 1.06308 1.06158 1.32092 1.82503 0.90401 1.07882 1.31524 1.74499 1.27129 1.00772 1.15056 1.22706 0.88825 0.98871 1.22976 1.23649 0.94251 0.84113 0.68139 1.90439 1.43803 1.66359 1.39125 1.21485 0.96188 0.83939 1.14588 1.20213 0.85776 1.07863 0.97121 1.23185 1.03226 0.91983 0.99836 1.22986 1.00916 0.98323 0.98021 0.89920 0.81953 0.84790 0.89730 0.83989 0.85377 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.32 11.86 21.67 0.26 -43.06 15 2 C 0.00 -0.13 5.50 84.98 0.47 0.34 15 3 Si 1.03 34.03 29.55 68.60 2.03 36.05 15 4 H -0.23 -6.58 7.11 99.48 0.71 -5.87 15 5 H -0.27 -8.78 7.11 99.48 0.71 -8.07 15 6 H -0.27 -8.81 7.11 99.48 0.71 -8.10 15 7 C -0.32 -15.63 10.06 84.01 0.85 -14.78 15 8 H 0.16 6.33 7.43 -2.91 -0.02 6.31 15 9 N -0.15 -7.81 3.73 -177.20 -0.66 -8.47 15 10 N -0.15 -8.96 11.64 37.02 0.43 -8.53 15 11 N -0.31 -18.51 12.37 -49.59 -0.61 -19.13 15 12 C -0.19 -9.21 7.01 40.86 0.29 -8.92 15 13 C 0.44 17.37 10.70 70.04 0.75 18.12 15 14 O -0.52 -24.66 17.91 -3.13 -0.06 -24.71 15 15 C -0.02 -0.99 6.49 41.94 0.27 -0.71 15 16 C -0.09 -2.71 5.57 -11.53 -0.06 -2.77 15 17 C -0.14 -3.19 8.89 30.60 0.27 -2.92 15 18 C -0.17 -4.21 10.06 30.60 0.31 -3.90 15 19 H 0.29 14.13 8.30 -92.71 -0.77 13.36 15 20 H 0.16 4.28 7.00 -2.91 -0.02 4.26 15 21 H 0.13 3.46 8.14 -2.39 -0.02 3.44 15 22 H 0.08 2.07 7.64 -2.39 -0.02 2.05 15 23 H 0.14 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.13 2.40 8.14 -2.39 -0.02 2.38 15 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -75.35 235.59 5.73 -69.62 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.21 Total: 13.78 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 3.14 Total: -15.55 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -0.59 Total: -79.19 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.05 kcal Total: -75.35 5.73 -69.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295559.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.894 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds