Wall clock time and date at job start Mon Mar 30 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30555 * 1 3 3 Si 1.86803 * 120.00303 * 2 1 4 4 H 1.48491 * 109.47212 * 270.27346 * 3 2 1 5 5 H 1.48501 * 109.46722 * 30.27704 * 3 2 1 6 6 H 1.48500 * 109.46897 * 150.27319 * 3 2 1 7 7 C 1.40395 * 120.00029 * 180.27308 * 2 1 3 8 8 H 1.07999 * 120.00206 * 179.72814 * 7 2 1 9 9 C 1.40153 * 119.99686 * 359.72470 * 7 2 1 10 10 N 1.32524 * 125.30676 * 0.03109 * 9 7 2 11 11 C 1.33986 * 109.85154 * 179.97438 * 10 9 7 12 12 N 1.33654 * 132.83940 * 179.97438 * 11 10 9 13 13 C 1.31274 * 121.56016 * 179.97438 * 12 11 10 14 14 C 1.39340 * 121.45143 * 0.06651 * 13 12 11 15 15 F 1.35103 * 120.25461 * 179.97438 * 14 13 12 16 16 C 1.38614 * 119.48684 * 359.96341 * 14 13 12 17 17 C 1.38909 * 118.23881 * 0.02562 * 16 14 13 18 18 N 1.37776 * 134.00858 * 180.31785 * 17 16 14 19 19 H 0.96997 * 126.56217 * 359.95546 * 18 17 16 20 20 H 0.97000 * 119.99459 * 359.72825 * 1 2 3 21 21 H 1.07995 * 119.26942 * 180.02562 * 13 12 11 22 22 H 1.08001 * 120.87506 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 2.4814 2.0497 -1.4000 5 1 1.4400 2.6509 0.7059 6 1 3.5401 1.4384 0.6943 7 6 2.0075 -1.2158 -0.0058 8 1 3.0875 -1.2159 -0.0102 9 6 1.3067 -2.4296 -0.0057 10 7 -0.0128 -2.5521 -0.0011 11 6 -0.3494 -3.8490 -0.0032 12 7 -1.5263 -4.4825 0.0001 13 6 -1.6011 -5.7931 -0.0036 14 6 -0.4558 -6.5867 -0.0097 15 9 -0.5610 -7.9336 -0.0128 16 6 0.7922 -5.9835 -0.0126 17 6 0.8515 -4.5957 -0.0089 18 7 1.8823 -3.6816 -0.0157 19 1 2.8315 -3.8812 -0.0245 20 1 -0.4849 0.8401 0.0040 21 1 -2.5717 -6.2665 -0.0012 22 1 1.6946 -6.5770 -0.0169 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074326867.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:33 Heat of formation + Delta-G solvation = 5.548626 kcal Electronic energy + Delta-G solvation = -12564.859707 eV Core-core repulsion = 10034.002513 eV Total energy + Delta-G solvation = -2530.857194 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.63547 -42.44687 -38.65788 -35.55026 -33.86010 -31.70481 -30.62422 -28.12717 -24.21802 -23.44832 -22.28313 -19.83019 -18.66483 -18.48756 -17.25302 -16.71934 -16.64962 -16.23336 -15.63564 -15.11555 -14.71188 -14.36120 -13.50758 -13.32374 -13.22184 -12.81646 -12.76816 -11.96096 -11.67103 -11.03269 -11.00080 -9.67578 -9.60687 -9.17737 -8.59555 -6.76421 0.07401 0.52017 1.45094 1.45274 1.63016 2.12789 2.14230 2.42687 2.97814 3.32869 3.45233 3.46396 3.83561 4.23677 4.35516 4.51605 4.89721 5.03191 5.31083 5.35588 5.78883 5.90485 6.16411 6.59863 7.09766 7.16240 7.87620 8.30968 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.089057 B = 0.008189 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.329515 B = 3418.438202 C = 3722.924629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.026 3.974 3 Si 1.010 2.990 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.446 4.446 8 H 0.121 0.879 9 C 0.401 3.599 10 N -0.570 5.570 11 C 0.247 3.753 12 N -0.503 5.503 13 C 0.094 3.906 14 C -0.018 4.018 15 F -0.136 7.136 16 C -0.093 4.093 17 C -0.032 4.032 18 N -0.635 5.635 19 H 0.425 0.575 20 H 0.290 0.710 21 H 0.189 0.811 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 -3.784 -0.013 6.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.199 4.199 3 Si 0.829 3.171 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.139 0.861 9 C 0.164 3.836 10 N -0.300 5.300 11 C -0.002 4.002 12 N -0.217 5.217 13 C -0.075 4.075 14 C -0.043 4.043 15 F -0.115 7.115 16 C -0.122 4.122 17 C -0.146 4.146 18 N -0.253 5.253 19 H 0.265 0.735 20 H 0.101 0.899 21 H 0.205 0.795 22 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.884 -2.488 -0.004 4.613 hybrid contribution 1.692 -0.947 -0.019 1.939 sum 5.576 -3.435 -0.024 6.549 Atomic orbital electron populations 1.70096 1.09652 1.30758 1.27138 1.27163 0.95675 1.05064 0.91969 0.84783 0.78795 0.73894 0.79672 1.18471 1.19629 1.16691 1.19261 0.95793 0.87236 1.46074 0.86124 1.20860 0.86745 0.85376 0.90644 1.71194 1.11058 1.12980 1.34763 1.20664 0.88312 0.92270 0.98907 1.66981 1.26321 1.10050 1.18359 1.22979 0.98744 0.87521 0.98233 1.17994 0.94506 0.77587 1.14223 1.91420 1.96851 1.28202 1.95030 1.20234 0.98279 0.90320 1.03383 1.19642 0.91755 0.92318 1.10881 1.43033 1.07716 1.04940 1.69601 0.73487 0.89933 0.79469 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.84 11.85 21.90 0.26 -39.58 14 2 C 0.03 1.22 5.50 85.41 0.47 1.69 14 3 Si 1.01 33.87 29.56 68.60 2.03 35.90 14 4 H -0.26 -8.43 7.11 99.48 0.71 -7.72 14 5 H -0.27 -8.98 7.11 99.48 0.71 -8.27 14 6 H -0.24 -7.48 7.11 99.48 0.71 -6.77 14 7 C -0.45 -21.38 9.47 23.26 0.22 -21.16 14 8 H 0.12 4.91 7.85 -2.91 -0.02 4.89 14 9 C 0.40 20.99 7.56 133.68 1.01 22.00 14 10 N -0.57 -33.60 9.33 -191.64 -1.79 -35.39 14 11 C 0.25 13.41 8.33 134.88 1.12 14.53 14 12 N -0.50 -25.25 10.42 -193.75 -2.02 -27.27 14 13 C 0.09 3.74 11.15 85.04 0.95 4.68 14 14 C -0.02 -0.66 7.36 22.63 0.17 -0.50 14 15 F -0.14 -4.46 17.28 44.97 0.78 -3.68 14 16 C -0.09 -3.51 10.17 22.52 0.23 -3.28 14 17 C -0.03 -1.45 7.31 39.15 0.29 -1.16 14 18 N -0.64 -27.72 6.32 -185.13 -1.17 -28.89 14 19 H 0.43 14.56 8.96 -92.71 -0.83 13.73 14 20 H 0.29 13.75 8.29 -92.71 -0.77 12.99 14 21 H 0.19 5.83 8.06 -2.91 -0.02 5.81 14 22 H 0.16 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -65.76 214.16 2.99 -62.76 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.45 Total: 19.35 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 4.46 Total: 16.81 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -4.72 Total: -131.14 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Total: -65.76 2.99 -62.76 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074326867.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.313 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds