Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47120 * 300.00517 * 3 2 1 6 6 H 1.48501 * 109.46866 * 60.00302 * 3 2 1 7 7 C 1.40150 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.41170 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.31922 * 126.53897 * 359.97438 * 9 7 2 11 11 O 1.41311 * 109.37467 * 180.02562 * 10 9 7 12 12 C 1.34973 * 109.71858 * 359.97438 * 11 10 9 13 13 C 1.39038 * 132.95591 * 180.02562 * 12 11 10 14 14 C 1.37814 * 119.97971 * 180.28373 * 13 12 11 15 15 C 1.38882 * 120.52162 * 359.43810 * 14 13 12 16 16 F 1.35102 * 119.88213 * 180.30792 * 15 14 13 17 17 C 1.38046 * 120.23249 * 0.56445 * 15 14 13 18 18 C 1.39254 * 119.70042 * 359.72113 * 17 15 14 19 19 H 0.96999 * 119.99835 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00630 * 0.02562 * 13 12 11 21 21 H 1.08003 * 119.73992 * 179.70168 * 14 13 12 22 22 H 1.07993 * 120.14788 * 179.74878 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3966 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0075 -1.2137 -0.0005 8 1 3.0875 -1.2137 -0.0001 9 6 1.3017 -2.4363 -0.0005 10 7 -0.0090 -2.5866 0.0004 11 8 -0.3229 -3.9644 0.0006 12 6 0.8148 -4.6906 -0.0008 13 6 1.0659 -6.0582 -0.0017 14 6 2.3643 -6.5199 0.0028 15 6 3.4298 -5.6291 -0.0035 16 9 4.6976 -6.0960 -0.0052 17 6 3.1980 -4.2682 -0.0026 18 6 1.8897 -3.7912 -0.0012 19 1 -0.4850 0.8400 0.0004 20 1 0.2435 -6.7583 -0.0016 21 1 2.5549 -7.5830 0.0070 22 1 4.0275 -3.5768 -0.0034 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075565868.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = -2.979138 kcal Electronic energy + Delta-G solvation = -12584.282583 eV Core-core repulsion = 10020.762846 eV Total energy + Delta-G solvation = -2563.519737 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.34508 -40.07046 -36.33280 -34.27105 -31.81681 -29.47248 -28.54425 -26.42414 -22.61567 -21.69094 -20.47129 -17.43436 -17.11232 -16.01123 -15.57299 -15.14766 -15.03968 -14.21553 -13.86145 -13.53360 -12.96342 -12.83694 -11.97503 -11.53115 -11.49715 -11.00314 -10.98625 -10.50705 -10.25398 -10.19296 -9.31494 -9.09603 -8.00911 -7.59770 -6.89006 -4.98018 1.51473 1.84620 2.87753 2.99484 3.05006 3.65130 3.79256 4.19919 4.20712 4.78202 5.10695 5.24636 5.38450 5.68423 5.77408 5.97671 6.49806 6.57202 6.58307 6.69725 6.95196 6.98939 7.42232 7.92809 8.27428 8.52106 9.33170 10.06655 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.043210 B = 0.010202 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.837141 B = 2743.816678 C = 3381.810560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.065 3.935 3 Si 0.924 3.076 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.417 4.417 8 H 0.095 0.905 9 C 0.211 3.789 10 N -0.352 5.352 11 O -0.157 6.157 12 C 0.081 3.919 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.029 3.971 16 F -0.151 7.151 17 C -0.078 4.078 18 C -0.151 4.151 19 H 0.285 0.715 20 H 0.132 0.868 21 H 0.134 0.866 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -4.659 0.002 6.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.456 4.456 8 H 0.113 0.887 9 C 0.055 3.945 10 N -0.128 5.128 11 O -0.150 6.150 12 C 0.025 3.975 13 C -0.148 4.148 14 C -0.134 4.134 15 C 0.010 3.990 16 F -0.130 7.130 17 C -0.098 4.098 18 C -0.155 4.155 19 H 0.096 0.904 20 H 0.150 0.850 21 H 0.152 0.848 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.668 -4.218 0.003 5.590 hybrid contribution 1.341 0.339 0.000 1.383 sum 5.009 -3.879 0.003 6.336 Atomic orbital electron populations 1.69806 1.07458 1.29602 1.30001 1.26052 0.95061 1.01659 0.93195 0.85979 0.80540 0.79926 0.78786 1.18111 1.19562 1.19559 1.18937 0.94495 0.87381 1.44802 0.88718 1.21101 0.90486 0.90480 0.92405 1.81423 1.11887 0.79202 1.40258 1.89091 1.26049 1.18779 1.81082 1.20460 0.88967 0.93124 0.94942 1.19682 0.96349 0.91285 1.07497 1.20695 0.91068 0.99273 1.02414 1.17233 0.78737 0.92018 1.11015 1.91421 1.37386 1.89200 1.94946 1.20506 0.96855 0.93232 0.99254 1.21129 0.93186 0.94073 1.07131 0.90386 0.85036 0.84812 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.75 11.97 55.56 0.66 -19.08 14 2 C 0.06 1.61 5.50 -17.33 -0.10 1.51 14 3 Si 0.92 17.94 29.56 -169.99 -5.03 12.91 14 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 14 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 7 C -0.42 -10.76 9.44 -37.75 -0.36 -11.12 14 8 H 0.09 2.21 7.85 -52.49 -0.41 1.80 14 9 C 0.21 5.75 6.95 -82.85 -0.58 5.18 14 10 N -0.35 -10.26 11.13 33.37 0.37 -9.89 14 11 O -0.16 -4.20 12.05 7.27 0.09 -4.11 14 12 C 0.08 1.89 7.45 -38.57 -0.29 1.61 14 13 C -0.13 -2.35 10.06 -39.44 -0.40 -2.75 14 14 C -0.11 -1.90 10.00 -39.50 -0.39 -2.30 14 15 C 0.03 0.54 7.29 -39.41 -0.29 0.25 14 16 F -0.15 -2.60 17.26 2.25 0.04 -2.56 14 17 C -0.08 -1.58 10.07 -39.27 -0.40 -1.98 14 18 C -0.15 -3.62 6.30 -104.93 -0.66 -4.28 14 19 H 0.29 6.77 8.29 -40.82 -0.34 6.43 14 20 H 0.13 2.00 8.06 -52.49 -0.42 1.58 14 21 H 0.13 1.73 8.06 -52.48 -0.42 1.31 14 22 H 0.13 2.48 8.06 -52.49 -0.42 2.05 14 LS Contribution 216.66 15.07 3.27 3.27 Total: -1.00 -29.27 216.66 -4.86 -34.13 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -0.81 Total: -0.79 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -3.45 Total: -13.88 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 1.04 Total: -28.98 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: 0.09 Total: -4.11 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.27 -4.86 -34.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565868.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.150 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds