Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47120 * 300.00517 * 3 2 1 6 6 H 1.48501 * 109.46866 * 60.00302 * 3 2 1 7 7 C 1.40150 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.41170 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.31922 * 126.53897 * 359.97438 * 9 7 2 11 11 O 1.41311 * 109.37467 * 180.02562 * 10 9 7 12 12 C 1.34973 * 109.71858 * 359.97438 * 11 10 9 13 13 C 1.39038 * 132.95591 * 180.02562 * 12 11 10 14 14 C 1.37814 * 119.97971 * 180.28373 * 13 12 11 15 15 C 1.38882 * 120.52162 * 359.43810 * 14 13 12 16 16 F 1.35102 * 119.88213 * 180.30792 * 15 14 13 17 17 C 1.38046 * 120.23249 * 0.56445 * 15 14 13 18 18 C 1.39254 * 119.70042 * 359.72113 * 17 15 14 19 19 H 0.96999 * 119.99835 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00630 * 0.02562 * 13 12 11 21 21 H 1.08003 * 119.73992 * 179.70168 * 14 13 12 22 22 H 1.07993 * 120.14788 * 179.74878 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3966 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0075 -1.2137 -0.0005 8 1 3.0875 -1.2137 -0.0001 9 6 1.3017 -2.4363 -0.0005 10 7 -0.0090 -2.5866 0.0004 11 8 -0.3229 -3.9644 0.0006 12 6 0.8148 -4.6906 -0.0008 13 6 1.0659 -6.0582 -0.0017 14 6 2.3643 -6.5199 0.0028 15 6 3.4298 -5.6291 -0.0035 16 9 4.6976 -6.0960 -0.0052 17 6 3.1980 -4.2682 -0.0026 18 6 1.8897 -3.7912 -0.0012 19 1 -0.4850 0.8400 0.0004 20 1 0.2435 -6.7583 -0.0016 21 1 2.5549 -7.5830 0.0070 22 1 4.0275 -3.5768 -0.0034 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075565868.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = -21.297964 kcal Electronic energy + Delta-G solvation = -12585.076947 eV Core-core repulsion = 10020.762846 eV Total energy + Delta-G solvation = -2564.314101 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.79025 -41.83876 -37.98002 -36.16035 -33.63784 -31.13795 -30.20197 -28.38242 -24.23944 -23.31758 -22.33075 -19.24302 -18.69656 -17.72577 -17.22763 -16.66900 -16.66348 -16.00980 -15.49330 -15.14892 -14.58404 -14.30712 -13.59401 -13.24957 -13.15373 -12.83706 -12.58083 -12.05480 -12.01373 -11.79114 -11.25633 -10.88489 -9.73726 -9.24928 -8.74372 -6.98277 -0.05817 0.25168 1.29595 1.39521 1.58822 1.88313 2.16045 2.49513 2.56565 3.19942 3.25849 3.72627 3.90823 4.08063 4.15667 4.47931 4.85106 4.99532 5.05588 5.07942 5.17272 5.36584 5.82691 6.05698 6.37302 6.58346 7.42874 8.24650 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.043210 B = 0.010202 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.837141 B = 2743.816678 C = 3381.810560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.017 3.983 3 Si 1.010 2.990 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.442 4.442 8 H 0.112 0.888 9 C 0.184 3.816 10 N -0.407 5.407 11 O -0.181 6.181 12 C 0.048 3.952 13 C -0.115 4.115 14 C -0.090 4.090 15 C 0.043 3.957 16 F -0.139 7.139 17 C -0.086 4.086 18 C -0.183 4.183 19 H 0.293 0.707 20 H 0.167 0.833 21 H 0.186 0.814 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -5.803 0.004 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.203 4.203 3 Si 0.827 3.173 4 H -0.165 1.165 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.130 0.870 9 C 0.029 3.971 10 N -0.183 5.183 11 O -0.177 6.177 12 C -0.007 4.007 13 C -0.135 4.135 14 C -0.110 4.110 15 C 0.023 3.977 16 F -0.118 7.118 17 C -0.107 4.107 18 C -0.186 4.186 19 H 0.103 0.897 20 H 0.185 0.815 21 H 0.204 0.796 22 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.715 -5.397 0.005 7.861 hybrid contribution 0.786 0.496 -0.001 0.930 sum 6.501 -4.901 0.004 8.142 Atomic orbital electron populations 1.69929 1.09654 1.31184 1.30792 1.27262 0.95794 1.05651 0.91603 0.84745 0.79440 0.74087 0.78981 1.16550 1.18886 1.18877 1.19488 0.95498 0.87889 1.45189 0.87022 1.21642 0.90728 0.92660 0.92090 1.81281 1.13499 0.81015 1.42479 1.88961 1.27708 1.18327 1.82659 1.21094 0.87739 0.94999 0.96849 1.20181 0.98418 0.89456 1.05443 1.21227 0.89357 1.01496 0.98875 1.17313 0.79674 0.91401 1.09277 1.91462 1.36774 1.88858 1.94681 1.20626 0.95734 0.94809 0.99505 1.21140 0.94902 0.92824 1.09742 0.89660 0.81509 0.79646 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.57 11.97 21.86 0.26 -43.31 14 2 C 0.02 0.87 5.50 85.33 0.47 1.34 14 3 Si 1.01 36.64 29.56 68.60 2.03 38.67 14 4 H -0.24 -8.13 7.11 99.48 0.71 -7.43 14 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 14 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 14 7 C -0.44 -23.46 9.44 23.45 0.22 -23.23 14 8 H 0.11 5.27 7.85 -2.91 -0.02 5.25 14 9 C 0.18 10.46 6.95 42.35 0.29 10.75 14 10 N -0.41 -25.04 11.13 -48.34 -0.54 -25.58 14 11 O -0.18 -10.15 12.05 28.40 0.34 -9.80 14 12 C 0.05 2.24 7.45 22.93 0.17 2.41 14 13 C -0.12 -3.91 10.06 22.36 0.23 -3.68 14 14 C -0.09 -2.58 10.00 22.32 0.22 -2.35 14 15 C 0.04 1.42 7.29 22.38 0.16 1.58 14 16 F -0.14 -4.22 17.26 44.97 0.78 -3.45 14 17 C -0.09 -3.42 10.07 22.47 0.23 -3.19 14 18 C -0.18 -8.88 6.30 -20.07 -0.13 -9.01 14 19 H 0.29 14.38 8.29 -92.71 -0.77 13.61 14 20 H 0.17 4.42 8.06 -2.91 -0.02 4.40 14 21 H 0.19 3.48 8.06 -2.91 -0.02 3.45 14 22 H 0.14 5.22 8.06 -2.91 -0.02 5.20 14 Total: -1.00 -67.45 216.66 6.00 -61.45 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.26 Total: 7.40 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 1.87 Total: -25.39 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -0.28 Total: -68.89 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.34 Total: -9.80 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.45 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -67.45 6.00 -61.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565868.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.155 kcal (2) G-P(sol) polarization free energy of solvation -67.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds