Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38812 * 119.70017 * 2 1 4 4 C 1.36483 * 120.29888 * 179.71791 * 3 2 1 5 5 C 1.41293 * 119.69109 * 0.57352 * 4 3 2 6 6 C 1.40345 * 120.29276 * 179.67908 * 5 4 3 7 7 H 1.07998 * 119.99621 * 207.86600 * 6 5 4 8 8 C 1.46542 * 119.99855 * 27.86674 * 6 5 4 9 9 N 1.29498 * 120.00162 * 11.71229 * 8 6 5 10 10 Si 1.86800 * 119.99748 * 191.70820 * 8 6 5 11 11 H 1.48511 * 109.47075 * 60.00272 * 10 8 6 12 12 H 1.48505 * 109.46958 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47407 * 300.00073 * 10 8 6 14 14 C 1.41262 * 119.41617 * 359.70035 * 5 4 3 15 15 C 1.36519 * 119.69529 * 0.02562 * 14 5 4 16 16 N 1.48010 * 119.85470 * 179.97438 * 15 14 5 17 17 O 1.31701 * 119.99625 * 353.10799 * 16 15 14 18 18 O 1.31702 * 120.00138 * 173.10827 * 16 15 14 19 19 H 1.08998 * 109.47366 * 262.43101 * 1 2 3 20 20 H 1.08998 * 109.47629 * 142.43278 * 1 2 3 21 21 H 1.09000 * 109.47270 * 22.43452 * 1 2 3 22 22 H 1.07999 * 119.85314 * 359.97438 * 3 2 1 23 23 H 1.08001 * 120.15666 * 180.25042 * 4 3 2 24 24 H 0.97001 * 120.00034 * 179.97438 * 9 8 6 25 25 H 1.08003 * 120.15199 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2058 0.0000 4 6 3.5595 1.2200 0.0058 5 6 4.2722 0.0000 -0.0005 6 6 5.6756 0.0000 -0.0014 7 1 6.2153 -0.8248 -0.4428 8 6 6.4087 1.1191 0.5966 9 7 5.7820 1.9904 1.3212 10 14 8.2474 1.2887 0.3138 11 1 8.5143 1.4215 -1.1410 12 1 8.7477 2.4952 1.0205 13 1 8.9418 0.0847 0.8366 14 6 3.5596 -1.2197 -0.0062 15 6 2.1945 -1.2055 -0.0062 16 7 1.4444 -2.4814 -0.0128 17 8 2.0869 -3.6222 -0.1556 18 8 0.1345 -2.4759 0.1240 19 1 -0.3634 -0.1354 1.0187 20 1 -0.3634 -0.8145 -0.6265 21 1 -0.3634 0.9499 -0.3922 22 1 1.6475 2.1368 -0.0004 23 1 4.0923 2.1595 0.0099 24 1 6.2673 2.7309 1.7173 25 1 4.0924 -2.1592 -0.0106 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095756004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = 15.928503 kcal Electronic energy + Delta-G solvation = -12900.229415 eV Core-core repulsion = 10460.989880 eV Total energy + Delta-G solvation = -2439.239535 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84502 -39.00572 -36.02026 -35.49902 -33.28811 -32.32846 -29.56916 -27.49976 -25.37243 -23.07363 -22.43808 -20.17958 -19.04909 -17.98353 -17.24348 -17.02410 -16.20411 -15.88374 -15.12973 -14.42215 -14.30999 -13.77908 -13.47523 -13.16281 -12.96040 -12.72964 -12.56052 -12.22703 -12.11247 -11.81997 -11.72336 -11.34795 -11.25046 -10.12699 -9.68773 -8.95772 -6.57951 -1.50776 0.36582 0.60095 0.71852 1.38360 1.45814 1.49892 2.12158 2.38195 3.23060 3.85916 4.08935 4.37439 4.44054 4.53243 4.69383 4.81817 4.87290 4.96434 5.03735 5.25151 5.45482 5.58882 5.68592 5.83741 6.00797 6.25948 6.45335 6.61497 7.97550 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.050060 B = 0.009167 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.194797 B = 3053.779377 C = 3535.535481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.125 4.125 5 C 0.082 3.918 6 C -0.486 4.486 7 H 0.086 0.914 8 C 0.043 3.957 9 N -0.781 5.781 10 Si 0.997 3.003 11 H -0.254 1.254 12 H -0.257 1.257 13 H -0.261 1.261 14 C -0.216 4.216 15 C 0.027 3.973 16 N -0.003 5.003 17 O -0.269 6.269 18 O -0.170 6.170 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.154 0.846 23 H 0.134 0.866 24 H 0.308 0.692 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 5.104 -0.990 5.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.155 4.155 3 C -0.112 4.112 4 C -0.144 4.144 5 C 0.078 3.922 6 C -0.512 4.512 7 H 0.105 0.895 8 C -0.182 4.182 9 N -0.402 5.402 10 Si 0.816 3.184 11 H -0.178 1.178 12 H -0.181 1.181 13 H -0.185 1.185 14 C -0.237 4.237 15 C -0.060 4.060 16 N 0.463 4.537 17 O -0.442 6.442 18 O -0.370 6.370 19 H 0.089 0.911 20 H 0.091 0.909 21 H 0.104 0.896 22 H 0.172 0.828 23 H 0.152 0.848 24 H 0.121 0.879 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.374 5.724 -0.839 5.798 hybrid contribution 0.518 -0.724 0.080 0.894 sum 0.892 5.000 -0.760 5.135 Atomic orbital electron populations 1.20988 0.88451 1.03575 1.02738 1.19745 0.97853 0.89713 1.08151 1.20771 0.94053 0.96269 1.00138 1.21772 0.93730 0.98732 1.00207 1.17735 0.94322 0.89755 0.90382 1.21030 0.90839 1.05369 1.33943 0.89543 1.28290 1.06500 0.92512 0.90891 1.69016 1.42522 1.10020 1.18652 0.85017 0.73734 0.79370 0.80308 1.17837 1.18106 1.18528 1.20728 0.90466 0.99515 1.12980 1.20134 0.91318 0.79591 1.14992 1.50954 1.02486 1.05177 0.95121 1.96191 1.69758 1.17762 1.60439 1.96044 0.91525 1.95664 1.53730 0.91138 0.90857 0.89633 0.82836 0.84803 0.87867 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.38 8.57 71.24 0.61 -2.77 15 2 C -0.15 -6.25 5.91 -19.60 -0.12 -6.36 15 3 C -0.09 -3.67 9.60 22.00 0.21 -3.46 15 4 C -0.12 -5.57 8.70 22.61 0.20 -5.38 15 5 C 0.08 4.03 5.59 -21.27 -0.12 3.91 15 6 C -0.49 -23.43 9.31 24.95 0.23 -23.20 15 7 H 0.09 4.08 7.96 -2.91 -0.02 4.06 15 8 C 0.04 1.82 5.40 87.20 0.47 2.29 15 9 N -0.78 -33.70 10.98 23.21 0.25 -33.45 15 10 Si 1.00 32.04 29.66 68.60 2.03 34.08 15 11 H -0.25 -8.04 7.11 99.48 0.71 -7.33 15 12 H -0.26 -7.55 7.11 99.48 0.71 -6.84 15 13 H -0.26 -8.46 7.11 99.48 0.71 -7.76 15 14 C -0.22 -10.81 9.30 22.61 0.21 -10.60 15 15 C 0.03 1.26 6.81 36.10 0.25 1.51 15 16 N 0.00 -0.16 4.98 -47.12 -0.23 -0.40 15 17 O -0.27 -13.61 19.14 3.51 0.07 -13.55 15 18 O -0.17 -7.54 15.92 3.51 0.06 -7.48 15 19 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 20 H 0.07 2.59 5.78 -2.39 -0.01 2.57 15 21 H 0.08 2.28 8.02 -2.39 -0.02 2.26 15 22 H 0.15 4.74 8.05 -2.91 -0.02 4.72 15 23 H 0.13 5.91 6.23 -2.91 -0.02 5.89 15 24 H 0.31 11.60 8.27 -92.71 -0.77 10.83 15 25 H 0.11 5.62 7.56 -2.91 -0.02 5.59 15 Total: -1.00 -53.95 231.20 5.34 -48.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.22 Total: 16.24 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 1.94 Total: -44.07 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.02 Total: -33.84 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.12 Total: -21.03 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.08 kcal Total: -53.95 5.34 -48.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095756004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.545 kcal (2) G-P(sol) polarization free energy of solvation -53.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds