Wall clock time and date at job start Mon Mar 30 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36515 * 120.15628 * 2 1 4 4 C 1.38781 * 120.30185 * 180.02562 * 3 2 1 5 5 C 1.38812 * 120.59638 * 359.73006 * 4 3 2 6 6 C 1.36490 * 120.30281 * 0.54803 * 5 4 3 7 7 N 1.48009 * 120.15749 * 179.72624 * 6 5 4 8 8 O 1.31698 * 120.00177 * 354.23771 * 7 6 5 9 9 O 1.31698 * 119.99940 * 173.96040 * 7 6 5 10 10 C 1.41261 * 120.15444 * 180.02562 * 2 1 3 11 11 C 1.40348 * 120.29045 * 359.96277 * 10 2 1 12 12 H 1.07992 * 120.00318 * 132.41319 * 11 10 2 13 13 C 1.46547 * 119.99764 * 312.41331 * 11 10 2 14 14 N 1.29503 * 119.99771 * 341.70178 * 13 11 10 15 15 Si 1.86795 * 120.00030 * 161.70442 * 13 11 10 16 16 H 1.48510 * 109.46959 * 89.99962 * 15 13 11 17 17 H 1.48501 * 109.47164 * 209.99817 * 15 13 11 18 18 H 1.48502 * 109.47346 * 330.00016 * 15 13 11 19 19 H 1.09000 * 109.47140 * 269.97698 * 1 2 3 20 20 H 1.08999 * 109.47141 * 29.97584 * 1 2 3 21 21 H 1.09000 * 109.46969 * 149.97658 * 1 2 3 22 22 H 1.08001 * 119.85396 * 0.04280 * 3 2 1 23 23 H 1.08004 * 119.70240 * 179.97438 * 4 3 2 24 24 H 1.08001 * 119.85402 * 180.28033 * 5 4 3 25 25 H 0.97006 * 119.99689 * 180.38355 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1804 0.0000 4 6 3.5805 1.1839 -0.0005 5 6 4.2901 -0.0091 0.0046 6 6 3.6294 -1.2034 -0.0011 7 7 4.3892 -2.4736 -0.0018 8 8 5.7015 -2.4559 -0.1114 9 8 3.7535 -3.6213 0.1128 10 6 2.2166 -1.2215 -0.0005 11 6 1.5243 -2.4423 -0.0003 12 1 1.8062 -3.2231 -0.6910 13 6 0.4188 -2.6575 0.9373 14 7 0.2994 -1.9016 1.9820 15 14 -0.8181 -4.0222 0.6256 16 1 -0.3504 -5.2723 1.2768 17 1 -2.1361 -3.6339 1.1887 18 1 -0.9508 -4.2455 -0.8365 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 1.6529 2.1158 0.0007 23 1 4.1133 2.1234 -0.0010 24 1 5.3700 0.0076 0.0087 25 1 -0.4292 -2.0476 2.6056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096868793.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:52 Heat of formation + Delta-G solvation = 27.079328 kcal Electronic energy + Delta-G solvation = -13323.043330 eV Core-core repulsion = 10884.287331 eV Total energy + Delta-G solvation = -2438.755999 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.70776 -36.57401 -34.43776 -32.61203 -31.57655 -30.63026 -27.11548 -25.48999 -24.28421 -21.03563 -20.14513 -18.00227 -16.43848 -16.36273 -15.69485 -14.67878 -14.32704 -14.09335 -13.29601 -12.92506 -12.67249 -11.99495 -11.75723 -11.65737 -11.27256 -11.00460 -10.81339 -10.59470 -10.23930 -9.58294 -9.50343 -9.22990 -9.10734 -8.16012 -7.80340 -7.42345 -4.96319 0.94380 2.35151 2.72428 2.79690 2.82151 2.88695 3.06883 3.54053 4.00232 4.77125 5.69567 5.77531 6.00333 6.11030 6.29526 6.31448 6.52013 6.53752 6.65211 6.97237 7.04518 7.19408 7.42199 7.51567 7.57307 7.87094 8.02195 8.22114 8.67787 9.38347 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.029032 B = 0.016041 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.217933 B = 1745.157326 C = 2550.167066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.108 4.108 3 C -0.082 4.082 4 C -0.215 4.215 5 C -0.040 4.040 6 C -0.087 4.087 7 N 0.032 4.968 8 O -0.343 6.343 9 O -0.249 6.249 10 C 0.106 3.894 11 C -0.349 4.349 12 H 0.115 0.885 13 C 0.067 3.933 14 N -0.719 5.719 15 Si 0.924 3.076 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.249 1.249 19 H 0.072 0.928 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 3.729 -0.923 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.101 4.101 4 C -0.236 4.236 5 C -0.059 4.059 6 C -0.186 4.186 7 N 0.461 4.539 8 O -0.490 6.490 9 O -0.420 6.420 10 C 0.101 3.899 11 C -0.377 4.377 12 H 0.132 0.868 13 C -0.163 4.163 14 N -0.341 5.341 15 Si 0.746 3.254 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.172 1.172 19 H 0.091 0.909 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.125 0.875 23 H 0.130 0.870 24 H 0.137 0.863 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.323 4.109 -0.730 7.576 hybrid contribution -0.106 -0.772 0.121 0.788 sum -6.429 3.337 -0.609 7.269 Atomic orbital electron populations 1.20704 0.91925 1.00321 1.01863 1.19772 0.95410 0.91555 1.04261 1.20561 0.94012 0.96914 0.98612 1.20491 0.93815 0.95786 1.13515 1.20238 0.99643 0.90773 0.95250 1.20058 0.91136 0.80809 1.26558 1.49846 1.01866 1.03846 0.98337 1.96078 0.91257 1.96224 1.65475 1.96097 1.70288 1.16529 1.59061 1.17064 0.87909 0.93985 0.90903 1.21573 1.06010 0.99139 1.10935 0.86767 1.27640 0.97136 0.97776 0.93731 1.69110 1.26314 1.32296 1.06379 0.85999 0.77768 0.80267 0.81412 1.18056 1.19273 1.17215 0.90935 0.94140 0.92003 0.87463 0.87032 0.86295 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 8.28 36.00 0.30 -1.42 15 2 C -0.11 -2.36 5.60 -104.10 -0.58 -2.94 15 3 C -0.08 -1.62 9.63 -40.00 -0.39 -2.00 15 4 C -0.21 -4.28 10.06 -39.17 -0.39 -4.68 15 5 C -0.04 -0.91 9.53 -40.00 -0.38 -1.29 15 6 C -0.09 -2.26 6.90 -79.42 -0.55 -2.81 15 7 N 0.03 0.91 4.98 34.22 0.17 1.08 15 8 O -0.34 -9.87 19.15 -31.57 -0.60 -10.47 15 9 O -0.25 -7.22 16.55 -31.57 -0.52 -7.75 15 10 C 0.11 2.64 5.28 -106.79 -0.56 2.08 15 11 C -0.35 -8.51 6.59 -35.44 -0.23 -8.74 15 12 H 0.11 2.88 6.72 -52.49 -0.35 2.53 15 13 C 0.07 1.45 3.72 -15.19 -0.06 1.39 15 14 N -0.72 -15.59 10.86 55.99 0.61 -14.98 15 15 Si 0.92 16.22 29.67 -169.99 -5.04 11.17 15 16 H -0.26 -4.64 7.11 56.52 0.40 -4.23 15 17 H -0.27 -4.36 7.11 56.52 0.40 -3.96 15 18 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 19 H 0.07 1.38 6.62 -51.93 -0.34 1.04 15 20 H 0.04 0.64 8.08 -51.93 -0.42 0.22 15 21 H 0.06 1.17 6.42 -51.93 -0.33 0.84 15 22 H 0.11 1.76 8.06 -52.49 -0.42 1.33 15 23 H 0.11 1.85 8.06 -52.48 -0.42 1.43 15 24 H 0.12 2.60 7.56 -52.49 -0.40 2.20 15 25 H 0.30 5.68 8.27 -40.82 -0.34 5.34 15 LS Contribution 227.91 15.07 3.43 3.43 Total: -1.00 -28.49 227.91 -6.63 -35.12 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -1.82 Total: 2.80 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.85 Total: -20.42 kcal Atomic # 7 Polarization: -14.67 SS G_CDS: 0.78 Total: -13.89 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.13 Total: -18.22 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.04 Total: 11.17 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.49 -6.63 -35.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096868793.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.201 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds