Wall clock time and date at job start Mon Mar 30 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36515 * 120.15628 * 2 1 4 4 C 1.38781 * 120.30185 * 180.02562 * 3 2 1 5 5 C 1.38812 * 120.59638 * 359.73006 * 4 3 2 6 6 C 1.36490 * 120.30281 * 0.54803 * 5 4 3 7 7 N 1.48009 * 120.15749 * 179.72624 * 6 5 4 8 8 O 1.31698 * 120.00177 * 354.23771 * 7 6 5 9 9 O 1.31698 * 119.99940 * 173.96040 * 7 6 5 10 10 C 1.41261 * 120.15444 * 180.02562 * 2 1 3 11 11 C 1.40348 * 120.29045 * 359.96277 * 10 2 1 12 12 H 1.07992 * 120.00318 * 132.41319 * 11 10 2 13 13 C 1.46547 * 119.99764 * 312.41331 * 11 10 2 14 14 N 1.29503 * 119.99771 * 341.70178 * 13 11 10 15 15 Si 1.86795 * 120.00030 * 161.70442 * 13 11 10 16 16 H 1.48510 * 109.46959 * 89.99962 * 15 13 11 17 17 H 1.48501 * 109.47164 * 209.99817 * 15 13 11 18 18 H 1.48502 * 109.47346 * 330.00016 * 15 13 11 19 19 H 1.09000 * 109.47140 * 269.97698 * 1 2 3 20 20 H 1.08999 * 109.47141 * 29.97584 * 1 2 3 21 21 H 1.09000 * 109.46969 * 149.97658 * 1 2 3 22 22 H 1.08001 * 119.85396 * 0.04280 * 3 2 1 23 23 H 1.08004 * 119.70240 * 179.97438 * 4 3 2 24 24 H 1.08001 * 119.85402 * 180.28033 * 5 4 3 25 25 H 0.97006 * 119.99689 * 180.38355 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1804 0.0000 4 6 3.5805 1.1839 -0.0005 5 6 4.2901 -0.0091 0.0046 6 6 3.6294 -1.2034 -0.0011 7 7 4.3892 -2.4736 -0.0018 8 8 5.7015 -2.4559 -0.1114 9 8 3.7535 -3.6213 0.1128 10 6 2.2166 -1.2215 -0.0005 11 6 1.5243 -2.4423 -0.0003 12 1 1.8062 -3.2231 -0.6910 13 6 0.4188 -2.6575 0.9373 14 7 0.2994 -1.9016 1.9820 15 14 -0.8181 -4.0222 0.6256 16 1 -0.3504 -5.2723 1.2768 17 1 -2.1361 -3.6339 1.1887 18 1 -0.9508 -4.2455 -0.8365 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 1.6529 2.1158 0.0007 23 1 4.1133 2.1234 -0.0010 24 1 5.3700 0.0076 0.0087 25 1 -0.4292 -2.0476 2.6056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096868793.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:52 Heat of formation + Delta-G solvation = 10.042615 kcal Electronic energy + Delta-G solvation = -13323.782098 eV Core-core repulsion = 10884.287331 eV Total energy + Delta-G solvation = -2439.494766 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47743 -38.35987 -36.27095 -34.48812 -33.27374 -32.44460 -28.89534 -27.19961 -26.15712 -22.77600 -21.90055 -19.84231 -18.27033 -18.21719 -17.40583 -16.28323 -16.17623 -15.85375 -14.87576 -14.54193 -14.33239 -13.62583 -13.50160 -13.33273 -12.80569 -12.62638 -12.30955 -12.12099 -11.83685 -11.50832 -11.29279 -11.16937 -11.09344 -9.90030 -9.59739 -9.20932 -6.87475 -1.07871 0.65324 0.92178 1.27622 1.33260 1.40259 1.49912 2.07548 2.27252 2.98766 4.01593 4.23398 4.42099 4.47059 4.52793 4.65404 4.87728 5.00505 5.08438 5.27939 5.44082 5.46540 5.64972 5.71463 5.81523 6.00426 6.09174 6.40985 6.78921 7.62308 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.029032 B = 0.016041 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.217933 B = 1745.157326 C = 2550.167066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.101 4.101 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.090 4.090 6 C -0.083 4.083 7 N 0.025 4.975 8 O -0.440 6.440 9 O -0.351 6.351 10 C 0.047 3.953 11 C -0.298 4.298 12 H 0.096 0.904 13 C 0.031 3.969 14 N -0.708 5.708 15 Si 0.989 3.011 16 H -0.267 1.267 17 H -0.230 1.230 18 H -0.247 1.247 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.056 0.944 22 H 0.159 0.841 23 H 0.158 0.842 24 H 0.115 0.885 25 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 6.636 -0.352 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.108 4.108 4 C -0.182 4.182 5 C -0.109 4.109 6 C -0.190 4.190 7 N 0.414 4.586 8 O -0.561 6.561 9 O -0.492 6.492 10 C 0.043 3.957 11 C -0.329 4.329 12 H 0.114 0.886 13 C -0.200 4.200 14 N -0.331 5.331 15 Si 0.806 3.194 16 H -0.192 1.192 17 H -0.152 1.152 18 H -0.170 1.170 19 H 0.093 0.907 20 H 0.098 0.902 21 H 0.075 0.925 22 H 0.177 0.823 23 H 0.175 0.825 24 H 0.133 0.867 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.817 6.816 -0.156 12.786 hybrid contribution 0.713 -1.266 0.063 1.454 sum -10.104 5.550 -0.093 11.528 Atomic orbital electron populations 1.20781 0.89433 1.02155 1.02390 1.20216 0.97178 0.90815 1.02013 1.21099 0.93908 0.98188 0.97624 1.21169 0.94456 0.96077 1.06534 1.20456 0.99993 0.91143 0.99292 1.20700 0.91953 0.81056 1.25293 1.49823 1.01472 1.03968 1.03312 1.95971 0.92617 1.96358 1.71185 1.95970 1.70226 1.18055 1.64953 1.17576 0.87853 0.95794 0.94513 1.22170 1.04705 0.98204 1.07800 0.88645 1.28458 0.98085 1.00442 0.92973 1.69018 1.26482 1.31781 1.05849 0.85086 0.76480 0.76360 0.81517 1.19232 1.15185 1.17048 0.90698 0.90198 0.92490 0.82338 0.82490 0.86708 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 8.28 71.23 0.59 -2.33 15 2 C -0.10 -3.99 5.60 -19.53 -0.11 -4.10 15 3 C -0.09 -3.04 9.63 22.00 0.21 -2.83 15 4 C -0.16 -5.78 10.06 22.54 0.23 -5.55 15 5 C -0.09 -4.16 9.53 22.00 0.21 -3.95 15 6 C -0.08 -4.50 6.90 36.72 0.25 -4.25 15 7 N 0.03 1.60 4.98 -45.65 -0.23 1.37 15 8 O -0.44 -28.71 19.15 3.52 0.07 -28.64 15 9 O -0.35 -22.66 16.55 3.52 0.06 -22.60 15 10 C 0.05 2.34 5.28 -21.27 -0.11 2.23 15 11 C -0.30 -14.53 6.59 24.95 0.16 -14.36 15 12 H 0.10 5.01 6.72 -2.91 -0.02 4.99 15 13 C 0.03 1.25 3.72 87.20 0.32 1.57 15 14 N -0.71 -27.93 10.86 23.21 0.25 -27.68 15 15 Si 0.99 30.25 29.67 68.60 2.04 32.28 15 16 H -0.27 -8.78 7.11 99.48 0.71 -8.07 15 17 H -0.23 -5.74 7.11 99.48 0.71 -5.03 15 18 H -0.25 -7.56 7.11 99.48 0.71 -6.85 15 19 H 0.07 2.40 6.62 -2.39 -0.02 2.39 15 20 H 0.08 1.98 8.08 -2.39 -0.02 1.96 15 21 H 0.06 1.87 6.42 -2.39 -0.02 1.85 15 22 H 0.16 3.87 8.06 -2.91 -0.02 3.84 15 23 H 0.16 4.25 8.06 -2.91 -0.02 4.23 15 24 H 0.11 5.33 7.56 -2.91 -0.02 5.31 15 25 H 0.33 10.60 8.27 -92.70 -0.77 9.83 15 Total: -1.00 -69.55 227.91 5.16 -64.39 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.22 Total: 14.45 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 1.76 Total: -33.57 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.02 Total: -26.32 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: 0.13 Total: -51.24 kcal Atomic # 14 Polarization: 30.25 SS G_CDS: 2.04 Total: 32.28 kcal Total: -69.55 5.16 -64.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096868793.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.435 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds