Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30548 * 1 3 3 Si 1.86802 * 120.00036 * 2 1 4 4 H 1.48500 * 109.46909 * 269.99559 * 3 2 1 5 5 H 1.48498 * 109.47277 * 29.99578 * 3 2 1 6 6 H 1.48505 * 109.47177 * 150.00078 * 3 2 1 7 7 C 1.40427 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.39983 * 119.99827 * 359.97438 * 7 2 1 10 10 N 1.32374 * 125.14094 * 0.02562 * 9 7 2 11 11 C 1.34157 * 108.90988 * 179.97438 * 10 9 7 12 12 C 1.40439 * 133.53760 * 179.97438 * 11 10 9 13 13 C 1.36437 * 119.83541 * 180.02562 * 12 11 10 14 14 C 1.38954 * 120.66394 * 359.97438 * 13 12 11 15 15 C 1.38286 * 120.57410 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.11518 * 180.02562 * 15 14 13 17 17 C 1.38689 * 119.76706 * 359.95862 * 15 14 13 18 18 O 1.35091 * 125.13592 * 179.97438 * 9 7 2 19 19 H 0.96995 * 119.99881 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.08499 * 0.02562 * 12 11 10 21 21 H 1.08005 * 119.67140 * 179.97438 * 13 12 11 22 22 H 1.08008 * 119.71557 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 2.4871 2.0463 -1.4001 5 1 1.4370 2.6527 0.6999 6 1 3.5371 1.4402 0.7000 7 6 2.0076 -1.2161 0.0005 8 1 3.0877 -1.2161 0.0010 9 6 1.3077 -2.4284 0.0016 10 7 -0.0108 -2.5470 0.0017 11 6 -0.3301 -3.8500 0.0023 12 6 -1.5492 -4.5472 0.0031 13 6 -1.5508 -5.9116 0.0041 14 6 -0.3564 -6.6217 0.0038 15 6 0.8566 -5.9577 0.0030 16 9 2.0123 -6.6574 0.0022 17 6 0.8826 -4.5711 0.0017 18 8 1.8756 -3.6541 0.0017 19 1 -0.4850 0.8400 -0.0004 20 1 -2.4831 -4.0048 0.0030 21 1 -2.4899 -6.4451 0.0052 22 1 -0.3756 -7.7016 0.0042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107291864.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -24.770848 kcal Electronic energy + Delta-G solvation = -12699.545407 eV Core-core repulsion = 10135.080711 eV Total energy + Delta-G solvation = -2564.464696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.15823 -41.37936 -36.70112 -34.29966 -32.54577 -29.47606 -28.98915 -26.47119 -22.24411 -21.65452 -20.54686 -17.74801 -17.20405 -16.56510 -15.51388 -15.49386 -14.92398 -14.37939 -14.31205 -13.73241 -12.83938 -12.22671 -11.91778 -11.55205 -11.37064 -11.23260 -10.95720 -10.68303 -10.60599 -10.15299 -9.40142 -8.53426 -7.86271 -7.38647 -7.04181 -5.06061 1.78969 2.20488 2.84414 2.87927 2.94291 3.58765 3.71744 4.10958 4.54581 5.03375 5.09425 5.45771 5.78112 5.95749 6.12787 6.25212 6.61187 6.69812 6.85874 7.14342 7.24301 7.38828 7.68969 7.84400 8.09650 8.35786 9.55557 9.85645 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.060440 B = 0.009491 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.156857 B = 2949.497639 C = 3402.813287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.067 3.933 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.401 4.401 8 H 0.103 0.897 9 C 0.354 3.646 10 N -0.544 5.544 11 C 0.129 3.871 12 C -0.145 4.145 13 C -0.081 4.081 14 C -0.221 4.221 15 C 0.140 3.860 16 F -0.151 7.151 17 C -0.108 4.108 18 O -0.249 6.249 19 H 0.288 0.712 20 H 0.121 0.879 21 H 0.122 0.878 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -2.350 0.003 2.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.162 4.162 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.433 4.433 8 H 0.121 0.879 9 C 0.176 3.824 10 N -0.276 5.276 11 C 0.004 3.996 12 C -0.166 4.166 13 C -0.101 4.101 14 C -0.242 4.242 15 C 0.120 3.880 16 F -0.130 7.130 17 C -0.160 4.160 18 O -0.149 6.149 19 H 0.099 0.901 20 H 0.139 0.861 21 H 0.140 0.860 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.097 -1.637 0.007 1.971 hybrid contribution 1.024 -0.071 -0.005 1.027 sum -0.072 -1.708 0.002 1.710 Atomic orbital electron populations 1.69950 1.07533 1.29803 1.24800 1.26074 0.95231 1.01423 0.93473 0.85833 0.80094 0.78429 0.79770 1.18759 1.19471 1.17954 1.18615 0.95232 0.85718 1.43774 0.87869 1.22560 0.86654 0.83107 0.90117 1.71590 1.10469 1.12135 1.33438 1.20347 0.92688 0.90995 0.95585 1.19845 0.95409 0.93035 1.08316 1.20202 0.96668 0.93323 0.99870 1.20333 0.90004 0.99233 1.14665 1.16399 0.81861 0.83998 1.05702 1.91405 1.48182 1.79037 1.94347 1.20288 0.89667 0.90366 1.15702 1.84673 1.34725 1.16216 1.79255 0.90093 0.86124 0.85990 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.74 11.84 55.57 0.66 -17.08 14 2 C 0.07 1.60 5.50 -17.27 -0.10 1.50 14 3 Si 0.94 17.07 29.56 -169.99 -5.03 12.04 14 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 14 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 7 C -0.40 -10.38 9.46 -38.10 -0.36 -10.74 14 8 H 0.10 2.43 7.85 -52.48 -0.41 2.02 14 9 C 0.35 10.02 7.68 -16.66 -0.13 9.89 14 10 N -0.54 -15.62 9.37 -11.08 -0.10 -15.72 14 11 C 0.13 3.38 7.22 -84.94 -0.61 2.76 14 12 C -0.14 -3.12 10.07 -39.40 -0.40 -3.52 14 13 C -0.08 -1.48 9.96 -39.97 -0.40 -1.87 14 14 C -0.22 -4.20 10.02 -39.30 -0.39 -4.59 14 15 C 0.14 3.17 7.31 -39.40 -0.29 2.88 14 16 F -0.15 -3.30 17.27 2.25 0.04 -3.26 14 17 C -0.11 -2.80 7.41 -38.33 -0.28 -3.08 14 18 O -0.25 -6.92 10.83 1.06 0.01 -6.90 14 19 H 0.29 6.42 8.29 -40.82 -0.34 6.08 14 20 H 0.12 2.39 8.06 -52.48 -0.42 1.97 14 21 H 0.12 1.71 8.06 -52.48 -0.42 1.29 14 22 H 0.13 1.96 8.06 -52.48 -0.42 1.54 14 LS Contribution 215.16 15.07 3.24 3.24 Total: -1.00 -29.40 215.16 -4.95 -34.35 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -0.81 Total: 0.09 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.96 Total: -6.76 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.55 Total: -32.80 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.01 Total: -6.90 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -29.40 -4.95 -34.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291864.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.579 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds