Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48496 * 109.47359 * 239.99958 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00228 * 3 2 1 7 7 C 1.39059 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 179.97438 * 7 2 1 9 9 N 1.36828 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00534 * 179.97438 * 9 7 2 11 11 O 1.21613 * 119.99601 * 0.02562 * 10 9 7 12 12 C 1.47698 * 120.00441 * 180.27737 * 10 9 7 13 13 C 1.39621 * 119.64534 * 179.72984 * 12 10 9 14 14 C 1.38182 * 119.15218 * 179.97438 * 13 12 10 15 15 C 1.39477 * 118.44126 * 0.02562 * 14 13 12 16 16 N 1.39085 * 120.39733 * 180.02562 * 15 14 13 17 17 C 1.39464 * 119.21006 * 359.97438 * 15 14 13 18 18 N 1.31336 * 120.77852 * 359.74721 * 17 15 14 19 19 H 0.97005 * 119.99996 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00095 * 0.02562 * 9 7 2 21 21 H 1.08000 * 120.42194 * 359.94874 * 13 12 10 22 22 H 1.08006 * 120.78301 * 180.02562 * 14 13 12 23 23 H 0.97002 * 119.99518 * 359.97438 * 16 15 14 24 24 H 0.97003 * 120.00498 * 179.97438 * 16 15 14 25 25 H 1.07997 * 119.60799 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6965 -1.2124 5 1 1.2825 2.7465 0.0006 6 1 3.1012 1.6964 1.2125 7 6 2.0088 -1.2043 -0.0005 8 1 3.0888 -1.2043 -0.0010 9 7 1.3247 -2.3893 -0.0005 10 6 1.9985 -3.5565 -0.0016 11 8 3.2147 -3.5564 -0.0021 12 6 1.2601 -4.8356 -0.0078 13 6 1.9657 -6.0403 -0.0145 14 6 1.2646 -7.2311 -0.0198 15 6 -0.1293 -7.1812 -0.0186 16 7 -0.8755 -8.3549 -0.0232 17 6 -0.7659 -5.9403 -0.0117 18 7 -0.0688 -4.8273 -0.0014 19 1 -0.4850 0.8401 0.0004 20 1 0.3547 -2.3893 -0.0005 21 1 3.0457 -6.0416 -0.0161 22 1 1.7836 -8.1782 -0.0246 23 1 -0.4268 -9.2148 -0.0276 24 1 -1.8447 -8.3135 -0.0219 25 1 -1.8449 -5.8942 -0.0112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128940884.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -5.077679 kcal Electronic energy + Delta-G solvation = -12627.040268 eV Core-core repulsion = 10219.182587 eV Total energy + Delta-G solvation = -2407.857680 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.84029 -37.63077 -34.83270 -33.95895 -31.70103 -31.09796 -28.88819 -25.14467 -23.39419 -22.69262 -19.73494 -17.97964 -17.32816 -16.84091 -16.27202 -15.14079 -14.54054 -14.07864 -13.98124 -13.72610 -13.10757 -12.86444 -12.59542 -11.87532 -11.50873 -11.13877 -10.90106 -10.42508 -10.22146 -9.50401 -9.28108 -9.21914 -8.37663 -7.96066 -7.47057 -6.44666 -3.77012 1.45439 1.70154 3.22304 3.26427 3.31230 3.78809 3.81184 4.16813 4.66413 4.84619 5.03643 5.07019 5.34085 5.41941 5.68688 6.05573 6.20193 6.25510 6.66527 6.93656 7.41964 7.51899 7.64992 8.06055 8.40991 8.68486 9.16391 9.60576 10.15062 10.71529 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.069187 B = 0.007384 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.603675 B = 3791.187746 C = 4185.938343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.297 4.297 8 H 0.107 0.893 9 N -0.526 5.526 10 C 0.475 3.525 11 O -0.605 6.605 12 C 0.057 3.943 13 C -0.079 4.079 14 C -0.167 4.167 15 C 0.157 3.843 16 N -0.871 5.871 17 C 0.028 3.972 18 N -0.427 5.427 19 H 0.275 0.725 20 H 0.405 0.595 21 H 0.142 0.858 22 H 0.129 0.871 23 H 0.396 0.604 24 H 0.398 0.602 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -12.726 -0.055 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.428 4.428 8 H 0.125 0.875 9 N -0.159 5.159 10 C 0.262 3.738 11 O -0.492 6.492 12 C -0.083 4.083 13 C -0.101 4.101 14 C -0.197 4.197 15 C 0.049 3.951 16 N -0.411 5.411 17 C -0.137 4.137 18 N -0.138 5.138 19 H 0.085 0.915 20 H 0.240 0.760 21 H 0.160 0.840 22 H 0.147 0.853 23 H 0.224 0.776 24 H 0.227 0.773 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.439 -11.641 -0.043 12.138 hybrid contribution -0.085 -0.447 -0.007 0.455 sum -3.525 -12.088 -0.050 12.591 Atomic orbital electron populations 1.69633 1.06128 1.28659 1.47789 1.25418 0.95661 1.00067 0.96839 0.85849 0.78794 0.79953 0.79251 1.19666 1.20825 1.19672 1.19827 0.93712 0.82339 1.46893 0.87529 1.41827 1.10300 1.04249 1.59490 1.17249 0.86821 0.82679 0.87029 1.90591 1.12860 1.86640 1.59101 1.21393 0.88883 0.95161 1.02900 1.21823 1.01755 0.91074 0.95401 1.20913 0.91759 0.98817 1.08211 1.18941 0.91917 0.88366 0.95838 1.42155 1.08568 1.05097 1.85256 1.22260 0.99727 0.86053 1.05686 1.67535 1.07959 1.30101 1.08175 0.91463 0.75990 0.83979 0.85289 0.77565 0.77343 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 13.05 55.50 0.72 -23.99 15 2 C 0.02 0.66 5.50 -17.45 -0.10 0.57 15 3 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.30 -8.65 9.68 -15.02 -0.15 -8.79 15 8 H 0.11 3.17 7.15 -52.49 -0.38 2.79 15 9 N -0.53 -14.73 5.26 -11.88 -0.06 -14.80 15 10 C 0.48 12.73 7.75 -12.40 -0.10 12.63 15 11 O -0.60 -17.56 15.88 5.27 0.08 -17.47 15 12 C 0.06 1.25 6.74 -83.03 -0.56 0.69 15 13 C -0.08 -1.45 9.62 -39.09 -0.38 -1.82 15 14 C -0.17 -2.41 10.02 -39.14 -0.39 -2.80 15 15 C 0.16 2.12 6.79 -83.65 -0.57 1.55 15 16 N -0.87 -7.64 9.07 32.51 0.29 -7.34 15 17 C 0.03 0.45 11.06 -17.31 -0.19 0.26 15 18 N -0.43 -8.79 9.52 -9.64 -0.09 -8.88 15 19 H 0.28 7.19 8.31 -40.82 -0.34 6.85 15 20 H 0.40 11.22 7.21 -40.82 -0.29 10.92 15 21 H 0.14 2.57 7.63 -52.49 -0.40 2.17 15 22 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 23 H 0.40 2.63 8.85 -40.82 -0.36 2.27 15 24 H 0.40 2.69 8.85 -40.82 -0.36 2.33 15 25 H 0.15 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 234.92 15.07 3.54 3.54 Total: -1.00 -33.09 234.92 -4.73 -37.82 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -1.77 Total: 12.66 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.42 Total: 2.29 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.86 Total: -55.01 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.08 Total: -17.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.09 -4.73 -37.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128940884.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds