Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48496 * 109.47359 * 239.99958 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00228 * 3 2 1 7 7 C 1.39059 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 179.97438 * 7 2 1 9 9 N 1.36828 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00534 * 179.97438 * 9 7 2 11 11 O 1.21613 * 119.99601 * 0.02562 * 10 9 7 12 12 C 1.47698 * 120.00441 * 180.27737 * 10 9 7 13 13 C 1.39621 * 119.64534 * 179.72984 * 12 10 9 14 14 C 1.38182 * 119.15218 * 179.97438 * 13 12 10 15 15 C 1.39477 * 118.44126 * 0.02562 * 14 13 12 16 16 N 1.39085 * 120.39733 * 180.02562 * 15 14 13 17 17 C 1.39464 * 119.21006 * 359.97438 * 15 14 13 18 18 N 1.31336 * 120.77852 * 359.74721 * 17 15 14 19 19 H 0.97005 * 119.99996 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00095 * 0.02562 * 9 7 2 21 21 H 1.08000 * 120.42194 * 359.94874 * 13 12 10 22 22 H 1.08006 * 120.78301 * 180.02562 * 14 13 12 23 23 H 0.97002 * 119.99518 * 359.97438 * 16 15 14 24 24 H 0.97003 * 120.00498 * 179.97438 * 16 15 14 25 25 H 1.07997 * 119.60799 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6965 -1.2124 5 1 1.2825 2.7465 0.0006 6 1 3.1012 1.6964 1.2125 7 6 2.0088 -1.2043 -0.0005 8 1 3.0888 -1.2043 -0.0010 9 7 1.3247 -2.3893 -0.0005 10 6 1.9985 -3.5565 -0.0016 11 8 3.2147 -3.5564 -0.0021 12 6 1.2601 -4.8356 -0.0078 13 6 1.9657 -6.0403 -0.0145 14 6 1.2646 -7.2311 -0.0198 15 6 -0.1293 -7.1812 -0.0186 16 7 -0.8755 -8.3549 -0.0232 17 6 -0.7659 -5.9403 -0.0117 18 7 -0.0688 -4.8273 -0.0014 19 1 -0.4850 0.8401 0.0004 20 1 0.3547 -2.3893 -0.0005 21 1 3.0457 -6.0416 -0.0161 22 1 1.7836 -8.1782 -0.0246 23 1 -0.4268 -9.2148 -0.0276 24 1 -1.8447 -8.3135 -0.0219 25 1 -1.8449 -5.8942 -0.0112 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128940884.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -32.389608 kcal Electronic energy + Delta-G solvation = -12628.224602 eV Core-core repulsion = 10219.182587 eV Total energy + Delta-G solvation = -2409.042014 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28412 -39.55033 -36.09700 -35.98730 -33.38348 -32.85092 -30.24090 -27.11135 -24.79299 -24.13209 -21.51232 -20.07424 -18.72713 -18.04103 -17.71379 -16.86903 -16.14855 -15.77858 -15.64650 -15.36034 -14.71172 -14.54484 -14.00311 -13.54623 -13.25410 -12.94608 -12.46314 -12.20082 -12.10583 -11.54052 -10.84201 -10.61865 -10.25563 -10.08064 -8.60978 -8.51131 -5.96991 0.03493 0.43371 1.41125 1.43391 1.54531 2.07923 2.29060 2.85118 2.95571 3.18494 3.38141 3.64487 3.93292 4.04485 4.31096 4.51313 4.84772 5.02228 5.23406 5.36508 5.61429 5.95282 6.40341 6.53126 6.93990 7.00313 7.11539 7.53396 8.06840 8.66088 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.069187 B = 0.007384 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.603675 B = 3791.187746 C = 4185.938343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.013 4.013 3 Si 1.005 2.995 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.344 4.344 8 H 0.086 0.914 9 N -0.543 5.543 10 C 0.474 3.526 11 O -0.640 6.640 12 C 0.002 3.998 13 C -0.075 4.075 14 C -0.165 4.165 15 C 0.194 3.806 16 N -0.839 5.839 17 C 0.017 3.983 18 N -0.453 5.453 19 H 0.282 0.718 20 H 0.402 0.598 21 H 0.136 0.864 22 H 0.173 0.827 23 H 0.415 0.585 24 H 0.415 0.585 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -15.112 -0.070 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.214 4.214 3 Si 0.827 3.173 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.473 4.473 8 H 0.104 0.896 9 N -0.176 5.176 10 C 0.263 3.737 11 O -0.529 6.529 12 C -0.136 4.136 13 C -0.097 4.097 14 C -0.195 4.195 15 C 0.082 3.918 16 N -0.378 5.378 17 C -0.150 4.150 18 N -0.164 5.164 19 H 0.092 0.908 20 H 0.237 0.763 21 H 0.154 0.846 22 H 0.191 0.809 23 H 0.246 0.754 24 H 0.246 0.754 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.755 -14.092 -0.058 14.873 hybrid contribution 0.140 -0.117 -0.003 0.183 sum -4.615 -14.209 -0.061 14.940 Atomic orbital electron populations 1.69707 1.07307 1.29898 1.48144 1.26326 0.96627 1.03003 0.95447 0.84833 0.77710 0.75507 0.79288 1.19240 1.19016 1.19252 1.19861 0.93175 0.83921 1.50380 0.89571 1.41848 1.09997 1.04579 1.61217 1.18119 0.86838 0.84143 0.84602 1.90521 1.14591 1.87752 1.60065 1.20719 0.89837 0.93769 1.09317 1.21838 1.01628 0.91382 0.94895 1.21235 0.92136 0.98855 1.07240 1.18950 0.91948 0.89096 0.91758 1.42188 1.09493 1.04305 1.81843 1.22826 1.01031 0.85884 1.05306 1.67338 1.07519 1.32853 1.08650 0.90823 0.76301 0.84632 0.80930 0.75428 0.75435 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 13.05 21.68 0.28 -52.09 15 2 C -0.01 -0.73 5.50 84.96 0.47 -0.26 15 3 Si 1.00 44.36 29.55 68.60 2.03 46.39 15 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.34 -21.15 9.68 84.11 0.81 -20.34 15 8 H 0.09 5.49 7.15 -2.91 -0.02 5.47 15 9 N -0.54 -32.33 5.26 -309.77 -1.63 -33.96 15 10 C 0.47 26.91 7.75 86.74 0.67 27.58 15 11 O -0.64 -39.44 15.88 -4.07 -0.06 -39.50 15 12 C 0.00 0.07 6.74 41.82 0.28 0.35 15 13 C -0.08 -2.74 9.62 22.59 0.22 -2.52 15 14 C -0.16 -4.14 10.02 22.56 0.23 -3.91 15 15 C 0.19 4.39 6.79 38.59 0.26 4.65 15 16 N -0.84 -9.59 9.07 -51.05 -0.46 -10.05 15 17 C 0.02 0.50 11.06 85.06 0.94 1.44 15 18 N -0.45 -18.66 9.52 -184.41 -1.76 -20.42 15 19 H 0.28 14.91 8.31 -92.70 -0.77 14.14 15 20 H 0.40 23.63 7.21 -92.71 -0.67 22.96 15 21 H 0.14 4.98 7.63 -2.91 -0.02 4.96 15 22 H 0.17 2.82 8.06 -2.91 -0.02 2.80 15 23 H 0.41 2.72 8.85 -92.71 -0.82 1.90 15 24 H 0.41 3.00 8.85 -92.71 -0.82 2.18 15 25 H 0.18 3.95 8.06 -2.91 -0.02 3.93 15 Total: -1.00 -77.41 234.92 1.23 -76.18 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -1.05 Total: 26.46 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 3.88 Total: 7.00 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -3.57 Total: -116.53 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.06 Total: -39.50 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.41 1.23 -76.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128940884.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.788 kcal (2) G-P(sol) polarization free energy of solvation -77.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds