Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00233 * 2 1 4 4 H 1.48504 * 109.46802 * 270.00099 * 3 2 1 5 5 H 1.48496 * 109.46838 * 29.99374 * 3 2 1 6 6 H 1.48490 * 109.47295 * 149.99605 * 3 2 1 7 7 C 1.37876 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00011 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99804 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99953 * 180.02562 * 10 9 7 12 12 O 1.21510 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.48136 * 120.00148 * 180.02562 * 11 10 9 14 14 C 1.40110 * 121.14913 * 180.02562 * 13 11 10 15 15 C 1.38497 * 117.82834 * 179.97438 * 14 13 11 16 16 N 1.31921 * 119.96508 * 0.02562 * 15 14 13 17 17 N 1.28273 * 122.51784 * 359.97438 * 16 15 14 18 18 C 1.31926 * 122.32990 * 0.02562 * 17 16 15 19 19 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47061 * 60.00760 * 9 7 2 21 21 H 1.09000 * 109.47421 * 300.00093 * 9 7 2 22 22 H 0.96996 * 120.00192 * 0.02562 * 10 9 7 23 23 H 1.08005 * 121.08271 * 359.95862 * 14 13 11 24 24 H 1.07996 * 120.01952 * 179.97438 * 15 14 13 25 25 H 1.07993 * 120.17787 * 180.27575 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3250 -2.8216 0.0016 12 8 6.1146 -1.8980 0.0012 13 6 5.8188 -4.2182 0.0024 14 6 7.1909 -4.5018 0.0032 15 6 7.5761 -5.8321 0.0045 16 7 6.6617 -6.7829 0.0044 17 7 5.4041 -6.5301 0.0036 18 6 4.9321 -5.2982 0.0023 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6797 0.8895 21 1 3.8746 -0.6808 -0.8905 22 1 3.3696 -3.3125 0.0020 23 1 7.9241 -3.7088 0.0027 24 1 8.6246 -6.0909 0.0048 25 1 3.8661 -5.1253 0.0062 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132483705.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = 19.958719 kcal Electronic energy + Delta-G solvation = -12526.713647 eV Core-core repulsion = 10119.941627 eV Total energy + Delta-G solvation = -2406.772021 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18671 -38.98207 -34.68122 -33.31193 -32.84844 -32.24688 -28.33243 -25.39929 -24.58968 -22.25154 -20.56578 -18.42480 -17.64743 -16.76118 -16.24385 -15.31647 -15.21628 -15.08278 -14.44168 -14.13702 -13.51537 -13.14368 -12.50017 -12.40595 -11.21553 -11.07363 -10.88420 -10.31441 -10.30854 -10.20983 -10.05985 -9.62520 -9.52534 -8.90370 -8.42610 -6.30695 -4.34752 0.28968 0.73209 2.93128 3.19494 3.26302 3.33297 3.45852 3.65273 3.94566 4.24154 4.25897 4.43988 4.72874 4.82834 5.04187 5.15731 5.59633 5.70541 5.96199 6.60875 6.89050 6.90103 7.20838 7.89581 8.28451 8.47185 8.50987 8.68157 9.27434 10.80949 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.065244 B = 0.007061 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.054390 B = 3964.298895 C = 4378.209186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.219 3.781 10 N -0.689 5.689 11 C 0.544 3.456 12 O -0.542 6.542 13 C -0.120 4.120 14 C -0.065 4.065 15 C 0.035 3.965 16 N -0.236 5.236 17 N -0.244 5.244 18 C 0.069 3.931 19 H 0.269 0.731 20 H 0.031 0.969 21 H 0.026 0.974 22 H 0.398 0.602 23 H 0.162 0.838 24 H 0.178 0.822 25 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.584 -7.731 0.033 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.100 0.900 9 C 0.098 3.902 10 N -0.337 5.337 11 C 0.327 3.673 12 O -0.421 6.421 13 C -0.135 4.135 14 C -0.095 4.095 15 C -0.129 4.129 16 N -0.079 5.079 17 N -0.085 5.085 18 C -0.095 4.095 19 H 0.079 0.921 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.233 0.767 23 H 0.180 0.820 24 H 0.195 0.805 25 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.581 -8.540 0.037 14.389 hybrid contribution 0.288 2.150 -0.025 2.169 sum 11.869 -6.389 0.012 13.480 Atomic orbital electron populations 1.69873 1.06213 1.27600 1.48798 1.24784 0.94807 0.99179 0.93701 0.86820 0.80545 0.83224 0.79121 1.19757 1.20763 1.18505 1.21037 0.88184 0.95430 1.54069 0.90050 1.19634 0.95635 0.77684 0.97284 1.46177 1.05042 1.11834 1.70671 1.17953 0.83724 0.86919 0.78672 1.90751 1.55524 1.44862 1.50917 1.21519 0.95300 0.96154 1.00521 1.22633 0.96002 0.98624 0.92232 1.24350 1.02072 0.89927 0.96560 1.72870 0.96493 1.31319 1.07190 1.73056 1.06940 1.19406 1.09105 1.24663 1.02300 0.89342 0.93215 0.92092 0.95138 0.95587 0.76672 0.82038 0.80498 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.96 55.43 0.77 -24.84 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 15 7 C -0.55 -14.40 9.83 -34.44 -0.34 -14.74 15 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 15 9 C 0.22 5.08 4.50 -5.19 -0.02 5.06 15 10 N -0.69 -13.01 5.51 -62.34 -0.34 -13.35 15 11 C 0.54 9.74 7.80 -12.20 -0.10 9.64 15 12 O -0.54 -11.38 16.49 5.36 0.09 -11.29 15 13 C -0.12 -1.70 5.92 -104.57 -0.62 -2.32 15 14 C -0.06 -0.76 9.77 -38.78 -0.38 -1.14 15 15 C 0.03 0.37 11.30 -17.42 -0.20 0.17 15 16 N -0.24 -3.18 11.48 30.53 0.35 -2.83 15 17 N -0.24 -3.49 11.49 30.78 0.35 -3.14 15 18 C 0.07 0.92 10.84 -16.95 -0.18 0.73 15 19 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 20 H 0.03 0.74 7.20 -51.93 -0.37 0.37 15 21 H 0.03 0.63 7.57 -51.93 -0.39 0.23 15 22 H 0.40 6.47 6.48 -40.82 -0.26 6.21 15 23 H 0.16 1.68 7.80 -52.48 -0.41 1.27 15 24 H 0.18 1.13 8.06 -52.49 -0.42 0.70 15 25 H 0.18 1.96 6.53 -52.49 -0.34 1.61 15 LS Contribution 232.37 15.07 3.50 3.50 Total: -1.00 -31.48 232.37 -3.66 -35.14 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -1.78 Total: 1.41 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.93 Total: -0.53 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 1.13 Total: -44.17 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.48 -3.66 -35.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132483705.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.103 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds