Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00233 * 2 1 4 4 H 1.48504 * 109.46802 * 270.00099 * 3 2 1 5 5 H 1.48496 * 109.46838 * 29.99374 * 3 2 1 6 6 H 1.48490 * 109.47295 * 149.99605 * 3 2 1 7 7 C 1.37876 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00011 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99804 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99953 * 180.02562 * 10 9 7 12 12 O 1.21510 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.48136 * 120.00148 * 180.02562 * 11 10 9 14 14 C 1.40110 * 121.14913 * 180.02562 * 13 11 10 15 15 C 1.38497 * 117.82834 * 179.97438 * 14 13 11 16 16 N 1.31921 * 119.96508 * 0.02562 * 15 14 13 17 17 N 1.28273 * 122.51784 * 359.97438 * 16 15 14 18 18 C 1.31926 * 122.32990 * 0.02562 * 17 16 15 19 19 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47061 * 60.00760 * 9 7 2 21 21 H 1.09000 * 109.47421 * 300.00093 * 9 7 2 22 22 H 0.96996 * 120.00192 * 0.02562 * 10 9 7 23 23 H 1.08005 * 121.08271 * 359.95862 * 14 13 11 24 24 H 1.07996 * 120.01952 * 179.97438 * 15 14 13 25 25 H 1.07993 * 120.17787 * 180.27575 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3250 -2.8216 0.0016 12 8 6.1146 -1.8980 0.0012 13 6 5.8188 -4.2182 0.0024 14 6 7.1909 -4.5018 0.0032 15 6 7.5761 -5.8321 0.0045 16 7 6.6617 -6.7829 0.0044 17 7 5.4041 -6.5301 0.0036 18 6 4.9321 -5.2982 0.0023 19 1 -0.4849 0.8401 -0.0004 20 1 3.8752 -0.6797 0.8895 21 1 3.8746 -0.6808 -0.8905 22 1 3.3696 -3.3125 0.0020 23 1 7.9241 -3.7088 0.0027 24 1 8.6246 -6.0909 0.0048 25 1 3.8661 -5.1253 0.0062 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132483705.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -4.199720 kcal Electronic energy + Delta-G solvation = -12527.761236 eV Core-core repulsion = 10119.941627 eV Total energy + Delta-G solvation = -2407.819609 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.24097 -40.42070 -36.37519 -34.70398 -34.19932 -33.58423 -30.14148 -26.66407 -25.60004 -24.01171 -22.03927 -19.89814 -18.71132 -18.45178 -17.37292 -16.86133 -16.60477 -16.41925 -15.74258 -15.69541 -14.80209 -14.49534 -14.30915 -14.20151 -13.11223 -12.72398 -12.09349 -11.93335 -11.68509 -11.57949 -11.35327 -11.22290 -10.93095 -10.75596 -10.10484 -8.40213 -6.48490 -0.77809 -0.19612 1.34367 1.36999 1.48144 1.65522 2.06411 2.28176 2.55763 2.95456 3.02295 3.23035 3.50524 3.55620 3.82074 4.34461 4.53601 4.75188 4.76947 4.98249 5.07996 5.20619 5.31411 6.02683 6.49338 6.62573 7.01932 7.20581 7.52297 8.74297 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.065244 B = 0.007061 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.054390 B = 3964.298895 C = 4378.209186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.691 5.691 11 C 0.551 3.449 12 O -0.573 6.573 13 C -0.137 4.137 14 C -0.051 4.051 15 C 0.052 3.948 16 N -0.256 5.256 17 N -0.267 5.267 18 C 0.074 3.926 19 H 0.273 0.727 20 H 0.022 0.978 21 H 0.021 0.979 22 H 0.410 0.590 23 H 0.179 0.821 24 H 0.224 0.776 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.604 -7.985 0.008 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.340 5.340 11 C 0.337 3.663 12 O -0.454 6.454 13 C -0.151 4.151 14 C -0.081 4.081 15 C -0.113 4.113 16 N -0.097 5.097 17 N -0.107 5.107 18 C -0.091 4.091 19 H 0.082 0.918 20 H 0.040 0.960 21 H 0.039 0.961 22 H 0.247 0.753 23 H 0.197 0.803 24 H 0.241 0.759 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 13.599 -8.846 0.011 16.223 hybrid contribution -0.275 2.127 -0.016 2.144 sum 13.324 -6.719 -0.005 14.923 Atomic orbital electron populations 1.69984 1.07797 1.28689 1.50423 1.25608 0.95526 1.02757 0.93495 0.85851 0.79379 0.79159 0.79484 1.18972 1.20109 1.17951 1.21269 0.89828 0.94733 1.53015 0.92080 1.19249 0.93551 0.79991 0.96541 1.45972 1.06092 1.10611 1.71367 1.18333 0.82733 0.88225 0.77040 1.90728 1.56096 1.46369 1.52236 1.21188 0.96702 0.93851 1.03398 1.22949 0.95153 0.99829 0.90175 1.24993 1.03558 0.88580 0.94132 1.72797 0.96645 1.32624 1.07648 1.73045 1.07785 1.19659 1.10230 1.24802 1.02899 0.88843 0.92587 0.91819 0.95996 0.96103 0.75312 0.80342 0.75913 0.79200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.96 21.45 0.30 -53.99 15 2 C 0.03 1.46 5.47 84.65 0.46 1.92 15 3 Si 0.94 42.22 27.47 68.60 1.88 44.10 15 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.26 -11.20 6.54 99.48 0.65 -10.55 15 7 C -0.55 -29.09 9.83 25.60 0.25 -28.84 15 8 H 0.06 3.39 7.84 -2.91 -0.02 3.37 15 9 C 0.23 10.57 4.50 85.63 0.38 10.95 15 10 N -0.69 -25.73 5.51 -469.43 -2.59 -28.32 15 11 C 0.55 19.11 7.80 86.87 0.68 19.79 15 12 O -0.57 -23.42 16.49 -3.75 -0.06 -23.48 15 13 C -0.14 -3.64 5.92 -19.83 -0.12 -3.76 15 14 C -0.05 -1.05 9.77 22.79 0.22 -0.82 15 15 C 0.05 0.90 11.30 84.74 0.96 1.86 15 16 N -0.26 -6.25 11.48 -57.34 -0.66 -6.91 15 17 N -0.27 -7.23 11.49 -56.53 -0.65 -7.88 15 18 C 0.07 1.85 10.84 85.04 0.92 2.77 15 19 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 20 H 0.02 1.06 7.20 -2.39 -0.02 1.04 15 21 H 0.02 0.99 7.57 -2.39 -0.02 0.97 15 22 H 0.41 13.20 6.48 -92.71 -0.60 12.60 15 23 H 0.18 3.08 7.80 -2.91 -0.02 3.06 15 24 H 0.22 1.68 8.06 -2.91 -0.02 1.65 15 25 H 0.19 4.02 6.53 -2.91 -0.02 4.01 15 Total: -1.00 -67.13 232.37 2.56 -64.57 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.57 Total: 8.03 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 3.76 Total: 3.88 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.59 Total: -97.10 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Total: -67.13 2.56 -64.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132483705.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.373 kcal (2) G-P(sol) polarization free energy of solvation -67.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds