Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86807 * 119.99832 * 2 1 4 4 H 1.48494 * 109.47059 * 274.94683 * 3 2 1 5 5 H 1.48497 * 109.47079 * 34.94862 * 3 2 1 6 6 H 1.48498 * 109.46862 * 154.94671 * 3 2 1 7 7 C 1.38665 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00060 * 354.95481 * 7 2 1 9 9 O 1.34811 * 120.00149 * 175.22521 * 7 2 1 10 10 C 1.35592 * 117.00253 * 184.79778 * 9 7 2 11 11 C 1.38767 * 120.15172 * 354.43486 * 10 9 7 12 12 C 1.38092 * 120.06998 * 179.97438 * 11 10 9 13 13 C 1.38523 * 120.39841 * 359.97438 * 12 11 10 14 14 C 1.37889 * 120.31107 * 0.02562 * 13 12 11 15 15 C 1.39632 * 119.91674 * 359.72359 * 14 13 12 16 16 C 1.47441 * 120.19496 * 180.27720 * 15 14 13 17 17 N 1.29438 * 119.99811 * 17.98061 * 16 15 14 18 18 O 1.41597 * 120.00149 * 7.19331 * 17 16 15 19 19 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 20 20 H 1.07996 * 119.96532 * 359.96851 * 11 10 9 21 21 H 1.07997 * 119.79480 * 179.97438 * 12 11 10 22 22 H 1.07998 * 119.84135 * 180.02562 * 13 12 11 23 23 H 1.07995 * 120.04035 * 180.02562 * 14 13 12 24 24 H 1.07995 * 120.00144 * 197.98547 * 16 15 14 25 25 H 0.96693 * 114.00262 * 184.98284 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.3923 2.1068 -1.3948 5 1 1.5030 2.6203 0.8020 6 1 3.5953 1.4123 0.5929 7 6 2.0088 -1.2008 0.0005 8 1 1.4720 -2.1344 0.0832 9 8 3.3534 -1.2029 -0.0966 10 6 3.9620 -2.4109 -0.1911 11 6 3.2194 -3.5768 -0.0694 12 6 3.8409 -4.8062 -0.1664 13 6 5.2063 -4.8860 -0.3858 14 6 5.9596 -3.7377 -0.5091 15 6 5.3439 -2.4878 -0.4185 16 6 6.1425 -1.2560 -0.5556 17 7 7.3181 -1.3037 -1.0951 18 8 7.7757 -2.5041 -1.6905 19 1 -0.4850 0.8400 0.0004 20 1 2.1544 -3.5228 0.1014 21 1 3.2588 -5.7108 -0.0706 22 1 5.6830 -5.8522 -0.4605 23 1 7.0238 -3.8051 -0.6805 24 1 5.7467 -0.3141 -0.2057 25 1 8.6915 -2.4661 -1.9987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137789262.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = 13.593334 kcal Electronic energy + Delta-G solvation = -12899.920660 eV Core-core repulsion = 10460.579864 eV Total energy + Delta-G solvation = -2439.340795 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38214 -37.13571 -36.02349 -32.95495 -32.47003 -29.57513 -29.07314 -25.36740 -23.23278 -21.31159 -20.38423 -18.02061 -17.84643 -16.35261 -15.55400 -14.90566 -14.33151 -14.15133 -14.04875 -13.59512 -13.15189 -12.67442 -12.41119 -12.15339 -11.55346 -11.25743 -10.91119 -10.79731 -10.37981 -9.96046 -9.72217 -9.12975 -8.97399 -8.07599 -7.41204 -6.53824 -4.20117 1.46358 2.23204 2.92142 3.14963 3.19900 3.31423 3.60090 4.13273 4.48508 4.65330 5.01474 5.23679 5.52502 5.73645 5.92853 6.08336 6.25660 6.49261 6.66544 6.85425 7.09836 7.21386 7.27573 7.52596 7.66831 7.90979 8.06843 8.80230 9.38798 10.52963 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.011452 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.439881 B = 2444.321478 C = 3221.364326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.187 3.813 11 C -0.229 4.229 12 C -0.055 4.055 13 C -0.219 4.219 14 C -0.038 4.038 15 C -0.198 4.198 16 C 0.186 3.814 17 N -0.368 5.368 18 O -0.413 6.413 19 H 0.282 0.718 20 H 0.137 0.863 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.143 0.857 24 H 0.181 0.819 25 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -3.956 -0.488 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.126 0.874 9 O -0.110 6.110 10 C 0.132 3.868 11 C -0.249 4.249 12 C -0.074 4.074 13 C -0.238 4.238 14 C -0.057 4.057 15 C -0.202 4.202 16 C -0.021 4.021 17 N -0.113 5.113 18 O -0.317 6.317 19 H 0.092 0.908 20 H 0.154 0.846 21 H 0.130 0.870 22 H 0.128 0.872 23 H 0.160 0.840 24 H 0.198 0.802 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.424 -3.243 -0.566 9.982 hybrid contribution -0.106 0.093 -0.015 0.142 sum 9.317 -3.149 -0.581 9.852 Atomic orbital electron populations 1.69639 1.05666 1.28776 1.46699 1.24483 0.95025 0.98942 0.95317 0.86207 0.80632 0.81424 0.78962 1.19722 1.20516 1.18050 1.20797 0.76884 0.96977 1.52193 0.87363 1.83464 1.23340 1.25343 1.78832 1.19201 0.90837 0.85511 0.91287 1.21242 1.01408 0.91755 1.10452 1.20989 0.94462 0.96750 0.95249 1.20684 0.94257 0.97643 1.11227 1.21562 1.00234 0.90556 0.93368 1.18671 0.91338 0.93560 1.16650 1.25169 0.88592 0.97904 0.90464 1.76777 1.15447 1.06106 1.12981 1.88567 1.34089 1.31166 1.77838 0.90810 0.84582 0.86997 0.87180 0.84035 0.80191 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 13.96 55.48 0.77 -23.52 15 2 C 0.07 1.80 5.49 -17.52 -0.10 1.71 15 3 Si 0.90 20.61 28.62 -169.99 -4.87 15.75 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 7 C -0.39 -10.61 9.94 30.89 0.31 -10.31 15 8 H 0.11 2.99 5.44 -52.48 -0.29 2.70 15 9 O -0.21 -5.17 7.86 0.59 0.00 -5.16 15 10 C 0.19 4.25 6.66 -38.63 -0.26 3.99 15 11 C -0.23 -4.86 9.16 -39.44 -0.36 -5.23 15 12 C -0.06 -1.00 10.03 -39.53 -0.40 -1.40 15 13 C -0.22 -3.80 10.03 -39.60 -0.40 -4.19 15 14 C -0.04 -0.69 8.84 -39.19 -0.35 -1.04 15 15 C -0.20 -4.07 5.81 -104.87 -0.61 -4.68 15 16 C 0.19 3.53 10.97 -14.81 -0.16 3.37 15 17 N -0.37 -6.53 12.20 32.10 0.39 -6.14 15 18 O -0.41 -6.43 10.91 -11.47 -0.13 -6.55 15 19 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 20 H 0.14 2.97 5.64 -52.49 -0.30 2.67 15 21 H 0.11 1.68 8.06 -52.49 -0.42 1.26 15 22 H 0.11 1.59 8.06 -52.49 -0.42 1.16 15 23 H 0.14 2.42 5.23 -52.38 -0.27 2.15 15 24 H 0.18 3.25 7.77 -52.49 -0.41 2.84 15 25 H 0.38 3.94 9.28 45.68 0.42 4.36 15 LS Contribution 229.58 15.07 3.46 3.46 Total: -1.00 -29.25 229.58 -3.50 -32.75 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -0.82 Total: 7.20 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.32 Total: -17.77 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 1.17 Total: -29.66 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.12 Total: -11.72 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.87 Total: 15.75 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.25 -3.50 -32.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137789262.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.345 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds