Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86807 * 119.99832 * 2 1 4 4 H 1.48494 * 109.47059 * 274.94683 * 3 2 1 5 5 H 1.48497 * 109.47079 * 34.94862 * 3 2 1 6 6 H 1.48498 * 109.46862 * 154.94671 * 3 2 1 7 7 C 1.38665 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00060 * 354.95481 * 7 2 1 9 9 O 1.34811 * 120.00149 * 175.22521 * 7 2 1 10 10 C 1.35592 * 117.00253 * 184.79778 * 9 7 2 11 11 C 1.38767 * 120.15172 * 354.43486 * 10 9 7 12 12 C 1.38092 * 120.06998 * 179.97438 * 11 10 9 13 13 C 1.38523 * 120.39841 * 359.97438 * 12 11 10 14 14 C 1.37889 * 120.31107 * 0.02562 * 13 12 11 15 15 C 1.39632 * 119.91674 * 359.72359 * 14 13 12 16 16 C 1.47441 * 120.19496 * 180.27720 * 15 14 13 17 17 N 1.29438 * 119.99811 * 17.98061 * 16 15 14 18 18 O 1.41597 * 120.00149 * 7.19331 * 17 16 15 19 19 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 20 20 H 1.07996 * 119.96532 * 359.96851 * 11 10 9 21 21 H 1.07997 * 119.79480 * 179.97438 * 12 11 10 22 22 H 1.07998 * 119.84135 * 180.02562 * 13 12 11 23 23 H 1.07995 * 120.04035 * 180.02562 * 14 13 12 24 24 H 1.07995 * 120.00144 * 197.98547 * 16 15 14 25 25 H 0.96693 * 114.00262 * 184.98284 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.3923 2.1068 -1.3948 5 1 1.5030 2.6203 0.8020 6 1 3.5953 1.4123 0.5929 7 6 2.0088 -1.2008 0.0005 8 1 1.4720 -2.1344 0.0832 9 8 3.3534 -1.2029 -0.0966 10 6 3.9620 -2.4109 -0.1911 11 6 3.2194 -3.5768 -0.0694 12 6 3.8409 -4.8062 -0.1664 13 6 5.2063 -4.8860 -0.3858 14 6 5.9596 -3.7377 -0.5091 15 6 5.3439 -2.4878 -0.4185 16 6 6.1425 -1.2560 -0.5556 17 7 7.3181 -1.3037 -1.0951 18 8 7.7757 -2.5041 -1.6905 19 1 -0.4850 0.8400 0.0004 20 1 2.1544 -3.5228 0.1014 21 1 3.2588 -5.7108 -0.0706 22 1 5.6830 -5.8522 -0.4605 23 1 7.0238 -3.8051 -0.6805 24 1 5.7467 -0.3141 -0.2057 25 1 8.6915 -2.4661 -1.9987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137789262.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -6.859404 kcal Electronic energy + Delta-G solvation = -12900.807557 eV Core-core repulsion = 10460.579864 eV Total energy + Delta-G solvation = -2440.227693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03094 -38.70872 -37.48275 -34.56386 -34.22937 -31.09570 -30.66508 -27.27147 -24.73495 -22.94866 -21.88793 -19.87356 -19.44736 -17.90102 -17.05584 -16.52215 -15.97670 -15.85075 -15.60529 -15.18043 -14.66090 -14.37991 -14.11879 -13.80981 -13.18696 -12.77019 -12.61421 -12.30637 -12.08492 -11.61083 -11.30702 -10.92450 -10.62339 -9.58665 -9.04169 -8.51847 -6.24415 -0.04235 0.65302 1.34639 1.37524 1.44205 1.54078 2.27493 2.33776 2.77275 2.94121 3.16560 3.76207 4.09041 4.21294 4.50971 4.56647 4.84319 4.91746 5.16667 5.30078 5.57896 5.62427 5.69361 5.85945 6.03081 6.18817 6.81349 6.87471 7.50562 8.58895 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.011452 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.439881 B = 2444.321478 C = 3221.364326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.403 4.403 8 H 0.084 0.916 9 O -0.228 6.228 10 C 0.155 3.845 11 C -0.249 4.249 12 C -0.053 4.053 13 C -0.197 4.197 14 C -0.045 4.045 15 C -0.198 4.198 16 C 0.168 3.832 17 N -0.356 5.356 18 O -0.410 6.410 19 H 0.286 0.714 20 H 0.117 0.883 21 H 0.146 0.854 22 H 0.153 0.847 23 H 0.163 0.837 24 H 0.183 0.817 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -5.031 -0.910 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.479 4.479 8 H 0.102 0.898 9 O -0.133 6.133 10 C 0.102 3.898 11 C -0.269 4.269 12 C -0.072 4.072 13 C -0.216 4.216 14 C -0.064 4.064 15 C -0.202 4.202 16 C -0.040 4.040 17 N -0.098 5.098 18 O -0.321 6.321 19 H 0.096 0.904 20 H 0.135 0.865 21 H 0.164 0.836 22 H 0.170 0.830 23 H 0.180 0.820 24 H 0.200 0.800 25 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 12.193 -4.343 -0.990 12.981 hybrid contribution -0.660 0.106 0.033 0.669 sum 11.533 -4.237 -0.958 12.324 Atomic orbital electron populations 1.69721 1.07041 1.29777 1.49169 1.25264 0.95800 1.02168 0.95164 0.85311 0.79623 0.77419 0.79193 1.19293 1.19336 1.17392 1.20722 0.78137 0.96447 1.52605 0.89805 1.83421 1.21850 1.26513 1.81520 1.19664 0.92009 0.85396 0.92690 1.21335 1.00810 0.93092 1.11619 1.21366 0.95392 0.96569 0.93871 1.21217 0.93674 0.99161 1.07506 1.21937 1.01420 0.90051 0.93001 1.19028 0.90472 0.95268 1.15395 1.25192 0.89015 0.97760 0.92015 1.76692 1.14463 1.07302 1.11354 1.88495 1.36419 1.29883 1.77265 0.90441 0.86531 0.83603 0.82950 0.82004 0.80004 0.73976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.30 13.96 21.61 0.30 -52.99 15 2 C 0.02 0.87 5.49 84.84 0.47 1.34 15 3 Si 0.96 43.24 28.62 68.60 1.96 45.20 15 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 6 H -0.25 -10.82 7.11 99.48 0.71 -10.12 15 7 C -0.40 -22.82 9.94 67.92 0.68 -22.15 15 8 H 0.08 4.98 5.44 -2.91 -0.02 4.96 15 9 O -0.23 -11.72 7.86 -20.81 -0.16 -11.88 15 10 C 0.16 7.11 6.66 22.89 0.15 7.26 15 11 C -0.25 -10.67 9.16 22.36 0.20 -10.47 15 12 C -0.05 -1.78 10.03 22.30 0.22 -1.56 15 13 C -0.20 -5.97 10.03 22.25 0.22 -5.75 15 14 C -0.04 -1.50 8.84 22.52 0.20 -1.30 15 15 C -0.20 -7.84 5.81 -20.02 -0.12 -7.96 15 16 C 0.17 6.14 10.97 87.47 0.96 7.10 15 17 N -0.36 -11.64 12.20 -52.36 -0.64 -12.28 15 18 O -0.41 -11.07 10.91 -38.78 -0.42 -11.50 15 19 H 0.29 15.23 8.31 -92.71 -0.77 14.46 15 20 H 0.12 5.39 5.64 -2.91 -0.02 5.37 15 21 H 0.15 3.86 8.06 -2.91 -0.02 3.83 15 22 H 0.15 3.41 8.06 -2.91 -0.02 3.38 15 23 H 0.16 4.77 5.23 -2.84 -0.01 4.75 15 24 H 0.18 6.46 7.77 -2.91 -0.02 6.44 15 25 H 0.41 6.51 9.28 -73.87 -0.69 5.82 15 Total: -1.00 -64.29 229.58 4.58 -59.72 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.55 Total: 17.23 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 2.99 Total: -33.49 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.34 Total: -65.28 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.59 Total: -23.38 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.96 Total: 45.20 kcal Total: -64.29 4.58 -59.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137789262.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.859 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds