Wall clock time and date at job start Mon Mar 30 2020 02:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36523 * 119.85115 * 2 1 4 4 C 1.41250 * 119.69263 * 180.33783 * 3 2 1 5 5 C 1.40350 * 120.29194 * 179.67118 * 4 3 2 6 6 H 1.07995 * 120.00014 * 155.00666 * 5 4 3 7 7 C 1.46542 * 119.99952 * 335.00433 * 5 4 3 8 8 N 1.29501 * 119.99799 * 335.34691 * 7 5 4 9 9 Si 1.86797 * 120.00025 * 155.34141 * 7 5 4 10 10 H 1.48498 * 109.47359 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47155 * 300.00210 * 9 7 5 12 12 H 1.48506 * 109.46949 * 59.99984 * 9 7 5 13 13 C 1.41295 * 119.41822 * 359.39541 * 4 3 2 14 14 C 1.36483 * 119.68988 * 0.27969 * 13 4 3 15 15 N 1.48016 * 119.84922 * 179.97438 * 14 13 4 16 16 O 1.31699 * 120.00145 * 359.97438 * 15 14 13 17 17 O 1.31699 * 120.00141 * 179.97438 * 15 14 13 18 18 C 1.38775 * 119.84918 * 179.70679 * 2 1 3 19 19 H 1.08996 * 109.47124 * 270.28787 * 1 2 3 20 20 H 1.08994 * 109.47073 * 30.29237 * 1 2 3 21 21 H 1.09000 * 109.46559 * 150.28640 * 1 2 3 22 22 H 1.08003 * 120.15096 * 0.02562 * 3 2 1 23 23 H 0.96999 * 120.00213 * 354.18475 * 8 7 5 24 24 H 1.08000 * 120.15531 * 180.25015 * 13 4 3 25 25 H 1.07993 * 119.70118 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.1841 0.0000 4 6 3.5991 1.1802 -0.0072 5 6 4.3103 2.3901 -0.0143 6 1 5.3167 2.4271 0.3756 7 6 3.6873 3.6032 -0.5507 8 7 2.7336 3.5103 -1.4219 9 14 4.2686 5.2834 0.0221 10 1 3.4834 6.3398 -0.6653 11 1 4.0758 5.4000 1.4898 12 1 5.7087 5.4461 -0.3024 13 6 4.2897 -0.0524 -0.0014 14 6 3.5858 -1.2217 0.0053 15 7 4.3057 -2.5150 0.0109 16 8 5.6225 -2.5357 0.0088 17 8 3.6294 -3.6451 0.0179 18 6 2.1977 -1.2036 0.0062 19 1 -0.3633 0.0052 1.0276 20 1 -0.3633 0.8873 -0.5183 21 1 -0.3632 -0.8926 -0.5094 22 1 1.6466 2.1194 0.0004 23 1 2.4887 2.6437 -1.7824 24 1 5.3696 -0.0693 -0.0027 25 1 1.6505 -2.1346 0.0113 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148547150.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:58 Heat of formation + Delta-G solvation = 2.421111 kcal Electronic energy + Delta-G solvation = -12821.797161 eV Core-core repulsion = 10381.971902 eV Total energy + Delta-G solvation = -2439.825259 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88547 -39.33683 -36.13593 -35.58972 -33.93737 -32.20059 -28.17545 -27.40280 -27.19498 -22.98641 -22.30016 -20.20958 -19.16104 -18.63057 -17.10487 -17.07050 -16.45815 -15.87531 -15.09472 -14.67756 -14.28489 -13.98887 -13.20319 -13.12175 -12.80863 -12.69275 -12.62820 -12.45079 -12.14155 -11.96485 -11.95017 -11.67251 -11.18930 -10.23719 -9.94399 -9.47922 -6.76670 -1.68069 0.19231 0.51046 0.54470 1.51180 1.54983 1.81933 2.20395 2.32315 3.03644 3.77407 4.04900 4.14272 4.31822 4.38160 4.48289 4.65271 4.79456 4.93798 5.07720 5.10284 5.29797 5.38432 5.56654 5.72562 5.76392 5.90354 6.34275 6.41994 7.64954 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.009957 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.381265 B = 2811.509934 C = 3455.574994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.036 4.036 3 C -0.200 4.200 4 C 0.069 3.931 5 C -0.521 4.521 6 H 0.088 0.912 7 C 0.012 3.988 8 N -0.761 5.761 9 Si 1.125 2.875 10 H -0.264 1.264 11 H -0.257 1.257 12 H -0.256 1.256 13 C -0.203 4.203 14 C 0.043 3.957 15 N -0.008 5.008 16 O -0.229 6.229 17 O -0.187 6.187 18 C -0.218 4.218 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.120 0.880 23 H 0.295 0.705 24 H 0.116 0.884 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 3.125 1.730 5.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.038 4.038 3 C -0.219 4.219 4 C 0.065 3.935 5 C -0.546 4.546 6 H 0.106 0.894 7 C -0.213 4.213 8 N -0.379 5.379 9 Si 0.940 3.060 10 H -0.188 1.188 11 H -0.181 1.181 12 H -0.180 1.180 13 C -0.224 4.224 14 C -0.042 4.042 15 N 0.465 4.535 16 O -0.413 6.413 17 O -0.384 6.384 18 C -0.239 4.239 19 H 0.103 0.897 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.137 0.863 23 H 0.109 0.891 24 H 0.134 0.866 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.475 5.246 1.510 7.058 hybrid contribution 0.863 -2.539 -0.018 2.682 sum -3.611 2.707 1.492 4.754 Atomic orbital electron populations 1.20805 0.88154 1.03605 1.03452 1.19583 0.97568 0.90784 0.95832 1.21311 0.93544 0.97741 1.09320 1.17714 0.92738 0.91563 0.91445 1.22232 1.03164 0.93654 1.35520 0.89423 1.30214 0.91077 1.08490 0.91521 1.70105 1.19676 1.31978 1.16148 0.82904 0.77591 0.67728 0.77787 1.18843 1.18147 1.18018 1.20780 0.99682 0.90359 1.11626 1.20248 0.92648 0.78635 1.12692 1.51040 1.02844 1.05280 0.94335 1.96189 0.90251 1.96472 1.58432 1.96132 1.67183 1.19588 1.55469 1.20385 0.89339 0.99707 1.14457 0.89683 0.90836 0.90063 0.86259 0.89087 0.86569 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.98 10.00 71.24 0.71 -2.26 15 2 C -0.04 -1.43 5.84 -20.14 -0.12 -1.55 15 3 C -0.20 -8.81 7.60 22.61 0.17 -8.64 15 4 C 0.07 3.35 5.37 -21.27 -0.11 3.23 15 5 C -0.52 -24.68 9.26 24.95 0.23 -24.45 15 6 H 0.09 4.07 8.02 -2.91 -0.02 4.05 15 7 C 0.01 0.53 5.13 87.20 0.45 0.97 15 8 N -0.76 -34.27 12.31 23.21 0.29 -33.99 15 9 Si 1.13 35.54 30.08 68.60 2.06 37.61 15 10 H -0.26 -8.12 7.11 99.48 0.71 -7.41 15 11 H -0.26 -7.68 7.11 99.48 0.71 -6.97 15 12 H -0.26 -7.56 7.11 99.48 0.71 -6.85 15 13 C -0.20 -9.95 9.30 22.61 0.21 -9.74 15 14 C 0.04 2.03 6.84 36.10 0.25 2.27 15 15 N -0.01 -0.39 4.98 -47.11 -0.23 -0.63 15 16 O -0.23 -11.18 19.12 3.52 0.07 -11.11 15 17 O -0.19 -8.49 19.14 3.52 0.07 -8.42 15 18 C -0.22 -9.16 9.25 22.54 0.21 -8.96 15 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.07 1.99 8.08 -2.39 -0.02 1.97 15 21 H 0.08 2.03 8.08 -2.39 -0.02 2.01 15 22 H 0.12 5.21 6.44 -2.91 -0.02 5.20 15 23 H 0.30 13.82 6.70 -92.71 -0.62 13.20 15 24 H 0.12 5.72 7.54 -2.91 -0.02 5.69 15 25 H 0.14 5.27 7.56 -2.91 -0.02 5.25 15 Total: -1.00 -53.00 236.10 5.60 -47.40 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.36 Total: 18.26 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 2.00 Total: -49.12 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.05 Total: -34.61 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.13 Total: -19.53 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.06 Total: 37.61 kcal Total: -53.00 5.60 -47.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148547150.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.820 kcal (2) G-P(sol) polarization free energy of solvation -52.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds