Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08994 * 108.84381 * 301.75776 * 9 7 2 11 11 C 1.50000 * 108.85939 * 60.28068 * 9 7 2 12 12 C 1.33488 * 121.96754 * 86.12660 * 11 9 7 13 13 C 1.47264 * 116.92881 * 1.42047 * 12 11 9 14 14 S 1.75036 * 129.29237 * 197.32669 * 13 12 11 15 15 C 1.71106 * 90.20887 * 180.08273 * 14 13 12 16 16 N 1.29210 * 110.44326 * 359.97438 * 15 14 13 17 17 C 1.31330 * 117.88036 * 359.97438 * 16 15 14 18 18 C 1.51933 * 127.38977 * 180.09260 * 17 16 15 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.07992 * 119.01787 * 266.10023 * 11 9 7 21 21 H 1.08003 * 121.53314 * 181.40715 * 12 11 9 22 22 H 1.07999 * 124.77874 * 180.02562 * 15 14 13 23 23 H 1.08997 * 109.58159 * 28.32338 * 18 17 16 24 24 H 1.09005 * 109.58639 * 267.90394 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6087 -2.5307 0.8853 11 6 0.3940 -2.5697 -1.2235 12 6 0.8630 -3.0259 -2.3871 13 6 2.2601 -3.4911 -2.4067 14 16 3.3206 -3.7574 -3.7734 15 6 4.5727 -4.2461 -2.7146 16 7 4.1728 -4.1916 -1.4872 17 6 2.9423 -3.7930 -1.2593 18 6 2.2542 -3.6474 0.0874 19 1 -0.4850 0.8400 0.0004 20 1 -0.6334 -2.2420 -1.1652 21 1 0.2461 -3.0528 -3.2732 22 1 5.5588 -4.5558 -3.0281 23 1 2.9966 -3.4303 0.8554 24 1 1.7314 -4.5719 0.3325 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196468113.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = 32.883833 kcal Electronic energy + Delta-G solvation = -11190.170454 eV Core-core repulsion = 9194.419028 eV Total energy + Delta-G solvation = -1995.751426 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86403 -37.52011 -34.31480 -31.74519 -30.08888 -27.09535 -25.62586 -23.55619 -21.61612 -19.11095 -19.00779 -17.46312 -16.59264 -16.02523 -15.86793 -15.46390 -14.64764 -14.14568 -14.02446 -13.35490 -13.17009 -12.73794 -12.65616 -12.48302 -11.68353 -11.62473 -11.36373 -10.97861 -10.59252 -10.41641 -9.77083 -8.73392 -8.14456 -6.27824 -0.26858 0.58307 0.94934 1.35842 1.38316 1.47680 1.62601 2.27142 2.40620 3.14191 3.39978 4.16120 4.18937 4.46130 4.58240 4.71660 4.87580 4.96755 5.22957 5.41877 5.52542 5.69910 5.89619 6.16603 6.23102 6.78903 6.98009 7.37846 8.88138 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.011820 C = 0.011180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.298245 B = 2368.269431 C = 2503.822474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.043 0.957 9 C 0.054 3.946 10 H 0.028 0.972 11 C -0.034 4.034 12 C -0.170 4.170 13 C -0.189 4.189 14 S 0.161 5.839 15 C -0.007 4.007 16 N -0.493 5.493 17 C 0.039 3.961 18 C -0.020 4.020 19 H 0.265 0.735 20 H 0.102 0.898 21 H 0.134 0.866 22 H 0.233 0.767 23 H 0.067 0.933 24 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -6.270 -6.915 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.035 3.965 10 H 0.046 0.954 11 C -0.056 4.056 12 C -0.191 4.191 13 C -0.310 4.310 14 S 0.417 5.583 15 C -0.303 4.303 16 N -0.207 5.207 17 C -0.093 4.093 18 C -0.059 4.059 19 H 0.074 0.926 20 H 0.120 0.880 21 H 0.152 0.848 22 H 0.249 0.751 23 H 0.085 0.915 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.588 -6.239 -7.621 10.865 hybrid contribution -0.102 1.232 0.956 1.563 sum 4.486 -5.007 -6.665 9.467 Atomic orbital electron populations 1.69991 1.06736 1.27565 1.50651 1.25613 0.95726 1.01966 0.94472 0.85708 0.78871 0.79935 0.78150 1.20444 1.20212 1.19793 1.21224 0.92214 0.91006 1.50983 0.93837 1.17766 0.92500 0.93053 0.93185 0.95440 1.23565 0.98487 0.88259 0.95318 1.20833 0.91089 1.08613 0.98536 1.25104 1.01372 1.08387 0.96104 1.82933 1.04759 1.60610 1.10027 1.28818 1.05587 1.05991 0.89864 1.65413 1.15530 1.17266 1.22465 1.21275 0.88882 1.02123 0.97059 1.20194 0.96690 0.98403 0.90647 0.92623 0.88025 0.84796 0.75057 0.91457 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 12.19 21.45 0.26 -50.57 14 2 C 0.02 1.22 5.29 84.65 0.45 1.67 14 3 Si 0.95 43.83 29.54 68.60 2.03 45.85 14 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 14 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 14 7 C -0.52 -28.48 8.08 25.60 0.21 -28.28 14 8 H 0.04 2.49 7.73 -2.91 -0.02 2.47 14 9 C 0.05 2.68 2.37 -12.61 -0.03 2.65 14 10 H 0.03 1.45 8.14 -2.39 -0.02 1.43 14 11 C -0.03 -1.60 8.07 24.39 0.20 -1.40 14 12 C -0.17 -7.11 10.38 23.57 0.24 -6.86 14 13 C -0.19 -7.69 6.48 24.32 0.16 -7.53 14 14 S 0.16 4.90 23.19 -56.49 -1.31 3.59 14 15 C -0.01 -0.23 12.22 130.63 1.60 1.37 14 16 N -0.49 -19.48 10.48 -188.07 -1.97 -21.45 14 17 C 0.04 1.68 6.58 42.71 0.28 1.97 14 18 C -0.02 -0.87 5.74 30.14 0.17 -0.70 14 19 H 0.26 14.06 8.31 -92.71 -0.77 13.29 14 20 H 0.10 4.85 7.81 -2.91 -0.02 4.83 14 21 H 0.13 4.81 8.06 -2.91 -0.02 4.79 14 22 H 0.23 4.68 8.06 -2.91 -0.02 4.66 14 23 H 0.07 3.01 8.05 -2.39 -0.02 2.99 14 24 H 0.07 2.92 8.14 -2.38 -0.02 2.90 14 Total: -1.00 -61.33 226.22 3.48 -57.85 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: 1.20 Total: 1.84 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 3.28 Total: -37.11 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.71 Total: -72.02 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.31 Total: 3.59 kcal Total: -61.33 3.48 -57.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196468113.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.732 kcal (2) G-P(sol) polarization free energy of solvation -61.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds