Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00079 * 2 1 4 4 H 1.48503 * 109.47411 * 240.00531 * 3 2 1 5 5 H 1.48505 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46951 * 120.00235 * 3 2 1 7 7 C 1.39945 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99814 * 163.15462 * 7 2 1 9 9 C 1.41408 * 119.99950 * 343.16198 * 7 2 1 10 10 C 1.41323 * 120.53509 * 335.07868 * 9 7 2 11 11 N 1.31461 * 120.06296 * 180.02562 * 10 9 7 12 12 C 1.31516 * 121.69636 * 0.02562 * 11 10 9 13 13 C 1.39933 * 122.27799 * 359.97438 * 12 11 10 14 14 C 1.37396 * 118.87657 * 0.03289 * 13 12 11 15 15 C 1.52091 * 115.96334 * 179.88253 * 14 13 12 16 16 S 1.83283 * 103.43416 * 342.62258 * 15 14 13 17 17 C 1.52271 * 125.75314 * 180.02562 * 13 12 11 18 18 H 0.96999 * 119.99886 * 359.97438 * 1 2 3 19 19 H 1.07998 * 119.92360 * 0.08242 * 10 9 7 20 20 H 1.08006 * 118.85690 * 179.97438 * 12 11 10 21 21 H 1.09005 * 110.62915 * 224.13713 * 15 14 13 22 22 H 1.08993 * 110.76279 * 101.17375 * 15 14 13 23 23 H 1.08999 * 110.61307 * 78.97479 * 17 13 12 24 24 H 1.08993 * 110.61440 * 316.14370 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0532 -1.2319 -0.2716 9 6 1.3463 -2.4105 0.3537 10 6 0.2036 -2.3813 1.1846 11 7 -0.4040 -3.5012 1.5085 12 6 0.0231 -4.6684 1.0785 13 6 1.1453 -4.7954 0.2523 14 6 1.8252 -3.6617 -0.1223 15 6 3.0355 -3.8766 -1.0179 16 16 3.4078 -5.6591 -0.8104 17 6 1.7072 -6.1024 -0.2904 18 1 -0.4850 0.8400 0.0004 19 1 -0.1709 -1.4375 1.5527 20 1 -0.5109 -5.5597 1.3733 21 1 3.8747 -3.2673 -0.6821 22 1 2.7920 -3.6535 -2.0566 23 1 1.1224 -6.4467 -1.1434 24 1 1.7305 -6.8634 0.4896 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214138903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = 14.307284 kcal Electronic energy + Delta-G solvation = -11086.478701 eV Core-core repulsion = 9089.921736 eV Total energy + Delta-G solvation = -1996.556965 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.68429 -34.24816 -33.53410 -30.76546 -27.72821 -26.06422 -25.21528 -21.02175 -20.43624 -17.32253 -16.28505 -15.47400 -14.97099 -14.45427 -14.04578 -13.68641 -12.85436 -12.68574 -12.07064 -11.82661 -11.61381 -11.53586 -11.27257 -10.89397 -10.80328 -10.23752 -9.88622 -9.50826 -8.29589 -8.06747 -7.61359 -7.27986 -7.06011 -4.64957 2.37356 2.46044 2.55552 2.87593 2.94805 2.96697 3.07030 3.74106 4.44019 5.29893 5.35688 5.67168 5.75488 5.84883 6.01083 6.06406 6.18011 6.56557 6.79518 6.89278 7.07353 7.32522 7.52872 7.85467 8.12456 8.49766 8.52710 9.57197 9.90173 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.040560 B = 0.011532 C = 0.009228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.164846 B = 2427.523400 C = 3033.526759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.085 3.915 10 C 0.040 3.960 11 N -0.466 5.466 12 C -0.026 4.026 13 C -0.118 4.118 14 C -0.182 4.182 15 C 0.013 3.987 16 S -0.320 6.320 17 C -0.010 4.010 18 H 0.289 0.711 19 H 0.156 0.844 20 H 0.120 0.880 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -2.050 -1.287 3.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.079 3.921 10 C -0.124 4.124 11 N -0.173 5.173 12 C -0.182 4.182 13 C -0.121 4.121 14 C -0.190 4.190 15 C -0.135 4.135 16 S -0.093 6.093 17 C -0.159 4.159 18 H 0.100 0.900 19 H 0.173 0.827 20 H 0.137 0.863 21 H 0.114 0.886 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.979 -2.600 -0.951 4.067 hybrid contribution 0.046 1.361 -0.530 1.461 sum 3.025 -1.239 -1.482 3.589 Atomic orbital electron populations 1.69747 1.07720 1.30311 1.32837 1.26010 0.94851 1.01773 0.91877 0.86224 0.80112 0.79456 0.80282 1.18732 1.19997 1.18482 1.19555 0.97828 0.90668 1.39282 0.89795 1.18540 0.92673 0.91089 0.89763 1.23154 0.95715 0.95098 0.98426 1.67104 1.29972 0.98708 1.21501 1.21426 0.97563 0.95096 1.04122 1.20972 0.98354 0.92451 1.00321 1.20458 0.99998 0.94131 1.04457 1.22470 0.99039 0.90548 1.01409 1.87285 1.19142 1.12755 1.90085 1.22689 0.92346 0.98413 1.02423 0.90019 0.82744 0.86280 0.88568 0.89485 0.89170 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.90 10.94 55.55 0.61 -18.29 14 2 C 0.08 1.74 5.17 -17.34 -0.09 1.65 14 3 Si 0.92 17.30 29.59 -169.99 -5.03 12.27 14 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.28 -5.08 7.11 56.52 0.40 -4.67 14 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.44 -10.88 8.74 -37.74 -0.33 -11.21 14 8 H 0.08 1.95 7.22 -52.49 -0.38 1.57 14 9 C 0.09 2.18 5.63 -106.01 -0.60 1.58 14 10 C 0.04 1.05 9.92 -16.54 -0.16 0.88 14 11 N -0.47 -11.78 10.33 -12.18 -0.13 -11.91 14 12 C -0.03 -0.60 11.08 -17.05 -0.19 -0.78 14 13 C -0.12 -2.60 5.95 -103.51 -0.62 -3.21 14 14 C -0.18 -4.27 5.98 -102.73 -0.61 -4.89 14 15 C 0.01 0.26 6.73 36.69 0.25 0.50 14 16 S -0.32 -6.00 23.44 -107.50 -2.52 -8.52 14 17 C -0.01 -0.18 7.32 36.79 0.27 0.09 14 18 H 0.29 6.31 8.30 -40.82 -0.34 5.97 14 19 H 0.16 4.07 6.18 -52.49 -0.32 3.74 14 20 H 0.12 2.38 8.06 -52.48 -0.42 1.96 14 21 H 0.10 1.88 7.64 -51.93 -0.40 1.48 14 22 H 0.09 1.69 8.14 -51.93 -0.42 1.27 14 23 H 0.09 1.48 8.14 -51.93 -0.42 1.06 14 24 H 0.10 1.55 8.14 -51.93 -0.42 1.13 14 LS Contribution 223.96 15.07 3.38 3.38 Total: -1.00 -26.27 223.96 -7.70 -33.97 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -1.93 Total: 4.49 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.08 Total: -15.39 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.48 Total: -30.20 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -2.52 Total: -8.52 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.27 -7.70 -33.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214138903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.279 kcal (2) G-P(sol) polarization free energy of solvation -26.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds