Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48500 * 109.47187 * 270.00424 * 3 2 1 5 5 H 1.48503 * 109.46957 * 30.00050 * 3 2 1 6 6 H 1.48498 * 109.47271 * 150.00448 * 3 2 1 7 7 C 1.37880 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99719 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00069 * 179.97438 * 7 2 1 10 10 O 1.45203 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.34709 * 117.00300 * 179.97438 * 10 9 7 12 12 O 1.21474 * 119.99232 * 359.97438 * 11 10 9 13 13 C 1.47717 * 120.00408 * 179.97438 * 11 10 9 14 14 C 1.40074 * 120.56457 * 179.97438 * 13 11 10 15 15 C 1.38347 * 118.28148 * 179.97438 * 14 13 11 16 16 C 1.38360 * 119.31027 * 0.25750 * 15 14 13 17 17 N 1.31932 * 121.08875 * 359.48873 * 16 15 14 18 18 C 1.31683 * 121.88636 * 0.50115 * 17 16 15 19 19 H 0.97005 * 120.00233 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46946 * 59.99861 * 9 7 2 21 21 H 1.09001 * 109.47169 * 299.99400 * 9 7 2 22 22 H 1.07994 * 120.86112 * 359.96023 * 14 13 11 23 23 H 1.08002 * 120.34138 * 179.97438 * 15 14 13 24 24 H 1.07991 * 119.45755 * 179.72169 * 16 15 14 25 25 H 1.08005 * 119.72450 * 179.74406 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9955 -2.5630 -0.0010 11 6 5.3310 -2.7396 -0.0020 12 8 6.0709 -1.7762 -0.0034 13 6 5.8956 -4.1046 -0.0014 14 6 7.2824 -4.3018 -0.0030 15 6 7.7599 -5.6003 -0.0018 16 6 6.8613 -6.6524 -0.0045 17 7 5.5597 -6.4366 0.0019 18 6 5.0563 -5.2198 0.0013 19 1 -0.4851 0.8401 0.0004 20 1 3.8751 -0.6804 0.8888 21 1 3.8745 -0.6801 -0.8912 22 1 7.9613 -3.4620 -0.0053 23 1 8.8230 -5.7906 -0.0033 24 1 7.2314 -7.6669 -0.0081 25 1 3.9849 -5.0836 0.0025 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223115210.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = -74.203599 kcal Electronic energy + Delta-G solvation = -12534.657133 eV Core-core repulsion = 10091.509177 eV Total energy + Delta-G solvation = -2443.147956 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76890 -40.51854 -37.59725 -35.03771 -33.65770 -32.71523 -30.67402 -26.28559 -24.64110 -24.14178 -22.11335 -19.64380 -18.61126 -18.34564 -17.52538 -17.41420 -16.91351 -16.33750 -15.27343 -15.08573 -14.79890 -14.33231 -14.20178 -13.94182 -13.35970 -13.16447 -12.89918 -12.05528 -11.80455 -11.73253 -11.63528 -11.06753 -10.92881 -10.57797 -10.29236 -8.47288 -6.58231 -0.54555 0.15595 1.30014 1.30435 1.42364 1.44199 1.73211 2.21119 2.75247 2.84572 3.33058 3.67228 3.77342 3.89212 4.00439 4.31832 4.42603 4.67353 4.71453 4.97715 5.04964 5.10354 5.44768 5.55711 6.03841 6.46668 6.67279 6.82238 7.05274 8.68189 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.065877 B = 0.007150 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.931354 B = 3915.214890 C = 4325.001671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.029 3.971 3 Si 0.942 3.058 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.189 3.811 10 O -0.351 6.351 11 C 0.500 3.500 12 O -0.541 6.541 13 C -0.192 4.192 14 C -0.020 4.020 15 C -0.165 4.165 16 C 0.130 3.870 17 N -0.512 5.512 18 C 0.152 3.848 19 H 0.278 0.722 20 H 0.029 0.971 21 H 0.028 0.972 22 H 0.155 0.845 23 H 0.190 0.810 24 H 0.204 0.796 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.772 -10.036 -0.028 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.591 4.591 8 H 0.068 0.932 9 C 0.116 3.884 10 O -0.266 6.266 11 C 0.346 3.654 12 O -0.434 6.434 13 C -0.196 4.196 14 C -0.045 4.045 15 C -0.184 4.184 16 C -0.026 4.026 17 N -0.221 5.221 18 C -0.006 4.006 19 H 0.087 0.913 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.173 0.827 23 H 0.207 0.793 24 H 0.221 0.779 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 16.189 -10.333 -0.023 19.205 hybrid contribution 0.188 1.785 -0.009 1.795 sum 16.377 -8.548 -0.032 18.473 Atomic orbital electron populations 1.69961 1.07802 1.29152 1.49526 1.25589 0.95736 1.02730 0.93114 0.85799 0.79323 0.78439 0.80080 1.18188 1.18877 1.17920 1.20943 0.89142 0.94954 1.54109 0.93154 1.20977 0.93949 0.76321 0.97139 1.86520 1.22762 1.34813 1.82507 1.21617 0.81189 0.90387 0.72206 1.90743 1.61117 1.43544 1.47958 1.20228 0.96449 0.90377 1.12536 1.22013 0.92342 1.00120 0.90053 1.22581 1.04008 0.90866 1.00922 1.23892 0.87525 1.02175 0.88988 1.67883 1.17117 1.23085 1.13996 1.23207 1.00980 0.86757 0.89611 0.91259 0.95337 0.95411 0.82731 0.79272 0.77902 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.96 21.45 0.30 -56.28 15 2 C 0.03 1.67 5.47 84.66 0.46 2.13 15 3 Si 0.94 43.44 27.47 68.60 1.88 45.33 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 6 H -0.26 -11.43 6.54 99.48 0.65 -10.78 15 7 C -0.55 -33.01 10.00 25.60 0.26 -32.75 15 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 15 9 C 0.19 9.82 4.29 71.24 0.31 10.13 15 10 O -0.35 -16.55 9.48 -56.19 -0.53 -17.08 15 11 C 0.50 20.36 7.91 70.33 0.56 20.92 15 12 O -0.54 -23.79 16.21 19.92 0.32 -23.47 15 13 C -0.19 -6.00 5.89 -20.00 -0.12 -6.11 15 14 C -0.02 -0.45 9.72 22.74 0.22 -0.23 15 15 C -0.16 -2.42 10.10 22.32 0.23 -2.19 15 16 C 0.13 2.15 11.17 84.71 0.95 3.09 15 17 N -0.51 -12.98 10.35 -194.71 -2.01 -14.99 15 18 C 0.15 4.52 10.79 85.04 0.92 5.44 15 19 H 0.28 15.53 8.31 -92.70 -0.77 14.76 15 20 H 0.03 1.48 7.19 -2.39 -0.02 1.46 15 21 H 0.03 1.42 7.56 -2.39 -0.02 1.40 15 22 H 0.16 3.26 7.74 -2.91 -0.02 3.24 15 23 H 0.19 1.05 8.06 -2.91 -0.02 1.03 15 24 H 0.20 1.53 8.06 -2.92 -0.02 1.50 15 25 H 0.16 5.10 7.62 -2.91 -0.02 5.08 15 Total: -1.00 -71.40 236.15 4.88 -66.53 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: 1.14 Total: -0.46 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 3.77 Total: 0.43 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.71 Total: -71.27 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.21 Total: -40.55 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -71.40 4.88 -66.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223115210.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.676 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds