Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47412 * 239.99941 * 3 2 1 5 5 H 1.48499 * 109.47655 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99926 * 3 2 1 7 7 C 1.40423 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00017 * 179.72475 * 7 2 1 9 9 C 1.40365 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.33185 * 126.68005 * 179.72712 * 9 7 2 11 11 C 1.34306 * 105.48367 * 180.02562 * 10 9 7 12 12 C 1.48391 * 126.21260 * 180.02562 * 11 10 9 13 13 C 1.36527 * 126.91794 * 179.71080 * 12 11 10 14 14 N 1.35065 * 106.06296 * 179.85031 * 13 12 11 15 15 H 0.97001 * 125.73360 * 180.14879 * 14 13 12 16 16 N 1.28642 * 108.53635 * 0.42171 * 14 13 12 17 17 N 1.28625 * 110.48477 * 359.72976 * 16 14 13 18 18 N 1.31307 * 107.58062 * 359.97438 * 11 10 9 19 19 O 1.21262 * 110.52591 * 359.70494 * 18 11 10 20 20 H 0.97000 * 119.99583 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.97030 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6965 -1.2125 5 1 1.2742 2.7465 0.0006 6 1 3.0929 1.6964 1.2126 7 6 2.0074 -1.2161 -0.0005 8 1 3.0874 -1.2161 -0.0050 9 6 1.3056 -2.4317 -0.0005 10 7 1.8329 -3.6547 -0.0061 11 6 0.7863 -4.4964 -0.0042 12 6 0.8534 -5.9788 -0.0080 13 6 -0.1998 -6.8475 -0.0006 14 7 0.3376 -8.0865 -0.0115 15 1 -0.1594 -8.9196 -0.0118 16 7 1.6193 -7.9764 -0.0155 17 7 1.9646 -6.7374 -0.0137 18 7 -0.3072 -3.7695 0.0029 19 8 -0.0326 -2.5885 0.0113 20 1 -0.4849 0.8401 0.0004 21 1 -1.2499 -6.5950 0.0089 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236240514.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = 144.004009 kcal Electronic energy + Delta-G solvation = -12547.736030 eV Core-core repulsion = 10042.802674 eV Total energy + Delta-G solvation = -2504.933357 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.14004 -42.86785 -34.15330 -34.11389 -32.85329 -31.39616 -29.67148 -26.54209 -23.69117 -23.03010 -21.47043 -20.59888 -18.76114 -17.38806 -16.08862 -15.58680 -15.46876 -15.03918 -14.44868 -13.81563 -13.21546 -11.80803 -11.68338 -11.54687 -11.45568 -10.85437 -10.76661 -10.53769 -10.18845 -10.02328 -9.84213 -8.97507 -8.97098 -8.11572 -7.10947 -5.05278 1.69453 2.38493 2.83491 2.88389 2.96844 3.00909 3.41343 3.73651 4.16408 4.45281 4.94163 5.01853 5.29228 5.34954 5.47297 6.05299 6.48234 6.83310 6.97190 7.18800 7.86017 8.05095 8.24651 8.42226 8.69102 9.88004 10.25049 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.100448 B = 0.007472 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.683089 B = 3746.603926 C = 4015.436492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.411 4.411 8 H 0.115 0.885 9 C 0.303 3.697 10 N -0.586 5.586 11 C 0.230 3.770 12 C 0.089 3.911 13 C -0.021 4.021 14 N -0.396 5.396 15 H 0.447 0.553 16 N -0.091 5.091 17 N -0.227 5.227 18 N -0.454 5.454 19 O 0.055 5.945 20 H 0.293 0.707 21 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -5.265 0.016 6.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.155 4.155 3 Si 0.761 3.239 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.133 0.867 9 C 0.113 3.887 10 N -0.330 5.330 11 C -0.042 4.042 12 C -0.049 4.049 13 C -0.175 4.175 14 N -0.116 5.116 15 H 0.292 0.708 16 N -0.072 5.072 17 N -0.098 5.098 18 N -0.184 5.184 19 O 0.004 5.996 20 H 0.105 0.895 21 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.250 -6.357 0.005 6.743 hybrid contribution -1.103 0.897 0.004 1.422 sum -3.353 -5.460 0.009 6.407 Atomic orbital electron populations 1.69624 1.07779 1.31041 1.30661 1.26206 0.95157 1.02349 0.91770 0.85852 0.79622 0.77925 0.80512 1.18295 1.19858 1.18293 1.18587 0.95175 0.85325 1.45786 0.86683 1.24209 0.79573 0.93967 0.90990 1.72508 1.27181 0.98059 1.35220 1.21746 0.87342 0.91330 1.03828 1.18704 0.88940 0.90701 1.06600 1.23547 1.01636 0.83617 1.08738 1.44846 1.06942 1.09299 1.50490 0.70755 1.78235 0.93592 1.15235 1.20131 1.75429 1.24831 0.94958 1.14553 1.74586 1.23168 0.91074 1.29534 1.85514 1.25984 1.17268 1.70792 0.89540 0.78306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.02 12.05 55.57 0.67 -18.35 14 2 C 0.07 1.68 5.50 -17.29 -0.10 1.58 14 3 Si 0.94 17.35 29.56 -169.99 -5.03 12.33 14 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 14 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 14 7 C -0.41 -10.81 9.48 -37.96 -0.36 -11.17 14 8 H 0.12 2.86 7.85 -52.48 -0.41 2.45 14 9 C 0.30 8.65 7.80 -16.33 -0.13 8.52 14 10 N -0.59 -16.80 11.64 -11.62 -0.14 -16.93 14 11 C 0.23 6.05 8.06 -156.50 -1.26 4.79 14 12 C 0.09 1.94 7.22 -83.12 -0.60 1.34 14 13 C -0.02 -0.32 12.09 -16.75 -0.20 -0.53 14 14 N -0.40 -5.14 6.95 30.70 0.21 -4.93 14 15 H 0.45 3.24 8.96 -190.39 -1.71 1.54 14 16 N -0.09 -1.60 13.36 60.35 0.81 -0.79 14 17 N -0.23 -4.98 12.45 33.06 0.41 -4.56 14 18 N -0.45 -12.12 12.19 31.47 0.38 -11.74 14 19 O 0.05 1.56 9.72 15.17 0.15 1.70 14 20 H 0.29 6.45 8.29 -40.82 -0.34 6.12 14 21 H 0.20 2.49 8.06 -52.48 -0.42 2.06 14 LS Contribution 212.54 15.07 3.20 3.20 Total: -1.00 -32.81 212.54 -3.65 -36.45 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -1.68 Total: -0.92 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.65 Total: 4.53 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 2.35 Total: -57.30 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.15 Total: 1.70 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -32.81 -3.65 -36.45 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236240514.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.459 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds