Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47412 * 239.99941 * 3 2 1 5 5 H 1.48499 * 109.47655 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99926 * 3 2 1 7 7 C 1.40423 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00017 * 179.72475 * 7 2 1 9 9 C 1.40365 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.33185 * 126.68005 * 179.72712 * 9 7 2 11 11 C 1.34306 * 105.48367 * 180.02562 * 10 9 7 12 12 C 1.48391 * 126.21260 * 180.02562 * 11 10 9 13 13 C 1.36527 * 126.91794 * 179.71080 * 12 11 10 14 14 N 1.35065 * 106.06296 * 179.85031 * 13 12 11 15 15 H 0.97001 * 125.73360 * 180.14879 * 14 13 12 16 16 N 1.28642 * 108.53635 * 0.42171 * 14 13 12 17 17 N 1.28625 * 110.48477 * 359.72976 * 16 14 13 18 18 N 1.31307 * 107.58062 * 359.97438 * 11 10 9 19 19 O 1.21262 * 110.52591 * 359.70494 * 18 11 10 20 20 H 0.97000 * 119.99583 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.97030 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6965 -1.2125 5 1 1.2742 2.7465 0.0006 6 1 3.0929 1.6964 1.2126 7 6 2.0074 -1.2161 -0.0005 8 1 3.0874 -1.2161 -0.0050 9 6 1.3056 -2.4317 -0.0005 10 7 1.8329 -3.6547 -0.0061 11 6 0.7863 -4.4964 -0.0042 12 6 0.8534 -5.9788 -0.0080 13 6 -0.1998 -6.8475 -0.0006 14 7 0.3376 -8.0865 -0.0115 15 1 -0.1594 -8.9196 -0.0118 16 7 1.6193 -7.9764 -0.0155 17 7 1.9646 -6.7374 -0.0137 18 7 -0.3072 -3.7695 0.0029 19 8 -0.0326 -2.5885 0.0113 20 1 -0.4849 0.8401 0.0004 21 1 -1.2499 -6.5950 0.0089 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236240514.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = 116.249170 kcal Electronic energy + Delta-G solvation = -12548.939570 eV Core-core repulsion = 10042.802674 eV Total energy + Delta-G solvation = -2506.136897 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.06555 -44.32567 -36.08832 -35.96020 -34.37354 -33.14563 -31.40479 -28.53607 -25.38746 -24.50331 -23.33251 -22.33921 -20.37177 -19.03042 -17.98118 -17.35405 -17.10309 -16.74076 -15.90074 -15.62530 -14.86669 -13.66983 -13.45367 -13.06994 -13.06150 -12.60132 -12.32013 -12.12483 -11.97142 -11.73111 -11.44110 -11.03879 -10.73202 -9.92550 -8.94911 -7.10205 0.31655 0.71164 1.15586 1.44297 1.62121 1.73566 1.75571 2.18705 2.31129 2.83444 3.04224 3.20656 3.53194 4.03307 4.06549 4.47788 4.69827 4.95107 5.29173 5.85297 5.97895 6.04567 6.23060 6.44317 7.26124 8.06067 8.21068 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.100448 B = 0.007472 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.683089 B = 3746.603926 C = 4015.436492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.030 3.970 3 Si 1.022 2.978 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.252 1.252 7 C -0.429 4.429 8 H 0.122 0.878 9 C 0.273 3.727 10 N -0.627 5.627 11 C 0.238 3.762 12 C 0.031 3.969 13 C 0.026 3.974 14 N -0.357 5.357 15 H 0.476 0.524 16 N -0.089 5.089 17 N -0.270 5.270 18 N -0.465 5.465 19 O 0.024 5.976 20 H 0.308 0.692 21 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -5.162 0.018 6.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.192 4.192 3 Si 0.839 3.161 4 H -0.176 1.176 5 H -0.180 1.180 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.139 0.861 9 C 0.085 3.915 10 N -0.372 5.372 11 C -0.036 4.036 12 C -0.107 4.107 13 C -0.130 4.130 14 N -0.081 5.081 15 H 0.328 0.672 16 N -0.071 5.071 17 N -0.141 5.141 18 N -0.200 5.200 19 O -0.021 6.021 20 H 0.120 0.880 21 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.794 -6.287 0.007 6.880 hybrid contribution -1.015 0.742 0.004 1.257 sum -3.809 -5.545 0.010 6.727 Atomic orbital electron populations 1.69665 1.09582 1.33196 1.29289 1.27356 0.95980 1.05629 0.90258 0.84651 0.78262 0.72412 0.80818 1.17561 1.18036 1.17559 1.19132 0.95815 0.86016 1.45634 0.86073 1.24740 0.79983 0.94878 0.91874 1.72476 1.28612 0.98721 1.37372 1.22345 0.86537 0.93299 1.01406 1.18753 0.91169 0.89408 1.11359 1.23898 1.01859 0.82990 1.04266 1.44835 1.05759 1.10001 1.47532 0.67202 1.78121 0.95422 1.13519 1.19998 1.75382 1.26170 0.96266 1.16284 1.74472 1.23266 0.90598 1.31654 1.85444 1.25973 1.18240 1.72415 0.88033 0.74545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.37 12.05 21.90 0.26 -39.10 14 2 C 0.03 1.43 5.50 85.42 0.47 1.90 14 3 Si 1.02 34.24 29.56 68.60 2.03 36.27 14 4 H -0.25 -8.15 7.11 99.48 0.71 -7.44 14 5 H -0.26 -7.85 7.11 99.48 0.71 -7.14 14 6 H -0.25 -8.15 7.11 99.48 0.71 -7.44 14 7 C -0.43 -23.04 9.48 23.32 0.22 -22.82 14 8 H 0.12 6.14 7.85 -2.91 -0.02 6.12 14 9 C 0.27 16.19 7.80 85.06 0.66 16.86 14 10 N -0.63 -37.35 11.64 -305.06 -3.55 -40.90 14 11 C 0.24 12.80 8.06 137.42 1.11 13.90 14 12 C 0.03 1.36 7.22 41.03 0.30 1.66 14 13 C 0.03 0.76 12.09 83.80 1.01 1.77 14 14 N -0.36 -8.10 6.95 -56.79 -0.39 -8.50 14 15 H 0.48 4.79 8.96 -219.95 -1.97 2.82 14 16 N -0.09 -2.98 13.36 37.02 0.49 -2.48 14 17 N -0.27 -11.83 12.45 -49.31 -0.61 -12.45 14 18 N -0.47 -25.45 12.19 -56.03 -0.68 -26.13 14 19 O 0.02 1.42 9.72 64.35 0.63 2.04 14 20 H 0.31 13.29 8.29 -92.71 -0.77 12.52 14 21 H 0.24 4.95 8.06 -2.91 -0.02 4.93 14 Total: -1.00 -74.89 212.54 1.28 -73.61 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -0.67 Total: 4.36 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 3.77 Total: 13.27 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -4.48 Total: -129.56 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.63 Total: 2.04 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -74.89 1.28 -73.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236240514.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.861 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds