Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47334 * 274.98403 * 3 2 1 5 5 H 1.48491 * 109.47221 * 34.98714 * 3 2 1 6 6 H 1.48505 * 109.46818 * 154.98629 * 3 2 1 7 7 C 1.40428 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99714 * 186.00534 * 7 2 1 9 9 C 1.40385 * 119.99853 * 6.00415 * 7 2 1 10 10 N 1.33159 * 126.66374 * 174.32839 * 9 7 2 11 11 C 1.34394 * 105.47823 * 180.02562 * 10 9 7 12 12 C 1.48081 * 126.22317 * 179.97438 * 11 10 9 13 13 N 1.31405 * 126.50916 * 0.02562 * 12 11 10 14 14 N 1.28577 * 109.55886 * 179.97438 * 13 12 11 15 15 C 1.30714 * 109.98720 * 0.02562 * 14 13 12 16 16 N 1.35315 * 107.55645 * 359.97438 * 15 14 13 17 17 H 0.96989 * 127.04039 * 179.73756 * 16 15 14 18 18 N 1.31384 * 107.55788 * 0.22828 * 11 10 9 19 19 O 1.21269 * 110.50197 * 359.59655 * 18 11 10 20 20 H 0.96999 * 120.00220 * 359.97438 * 1 2 3 21 21 H 1.07994 * 126.22125 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3814 2.1073 -1.3948 5 1 1.4934 2.6199 0.8027 6 1 3.5855 1.4119 0.5920 7 6 2.0074 -1.2161 -0.0005 8 1 3.0829 -1.2187 0.0973 9 6 1.3112 -2.4285 -0.1283 10 7 1.8444 -3.6426 -0.2502 11 6 0.8012 -4.4849 -0.3422 12 6 0.8751 -5.9561 -0.4936 13 7 1.9690 -6.6809 -0.5624 14 7 1.6560 -7.9213 -0.6915 15 6 0.3558 -8.0542 -0.7124 16 7 -0.1828 -6.8191 -0.5880 17 1 -1.1255 -6.5916 -0.5734 18 7 -0.2961 -3.7651 -0.2790 19 8 -0.0264 -2.5897 -0.1518 20 1 -0.4850 0.8400 0.0004 21 1 -0.1894 -8.9813 -0.8102 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236241204.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = 100.949042 kcal Electronic energy + Delta-G solvation = -12580.030977 eV Core-core repulsion = 10073.230617 eV Total energy + Delta-G solvation = -2506.800360 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.23205 -44.06590 -36.17763 -35.94424 -34.88472 -32.93868 -31.29301 -28.66125 -25.66438 -24.18348 -23.05968 -22.47703 -20.59156 -18.88080 -18.15983 -17.46817 -17.04126 -16.85819 -16.04409 -15.71946 -14.95274 -13.76981 -13.52192 -13.10836 -12.83739 -12.51405 -12.41063 -12.01035 -11.96065 -11.70332 -11.69233 -11.18221 -10.82235 -10.02257 -9.01961 -7.18771 0.11763 0.97719 1.42513 1.46222 1.50854 1.63982 1.73300 2.16428 2.18090 2.73075 2.94465 3.08441 3.65706 3.91063 4.25230 4.49794 4.77206 4.89921 5.03872 5.72342 5.94870 6.06240 6.11666 6.36099 7.50369 7.95125 8.06698 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.099237 B = 0.007564 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.086007 B = 3701.056374 C = 3970.415524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.030 3.970 3 Si 1.023 2.977 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.248 1.248 7 C -0.420 4.420 8 H 0.126 0.874 9 C 0.274 3.726 10 N -0.612 5.612 11 C 0.232 3.768 12 C 0.251 3.749 13 N -0.283 5.283 14 N -0.341 5.341 15 C 0.201 3.799 16 N -0.555 5.555 17 H 0.449 0.551 18 N -0.463 5.463 19 O 0.029 5.971 20 H 0.310 0.690 21 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -3.356 -0.662 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.193 4.193 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.180 1.180 6 H -0.171 1.171 7 C -0.457 4.457 8 H 0.144 0.856 9 C 0.088 3.912 10 N -0.357 5.357 11 C -0.042 4.042 12 C -0.018 4.018 13 N -0.128 5.128 14 N -0.183 5.183 15 C -0.088 4.088 16 N -0.170 5.170 17 H 0.292 0.708 18 N -0.198 5.198 19 O -0.017 6.017 20 H 0.121 0.879 21 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -3.005 -4.221 -0.746 5.234 hybrid contribution -1.620 1.091 0.066 1.955 sum -4.625 -3.129 -0.680 5.625 Atomic orbital electron populations 1.69658 1.09641 1.33370 1.28653 1.27387 0.95973 1.05697 0.90215 0.84569 0.78800 0.72581 0.80107 1.17944 1.17978 1.17150 1.19249 0.96401 0.85926 1.44131 0.85641 1.24744 0.79592 0.94708 0.92157 1.72488 1.27861 0.98831 1.36558 1.21890 0.87391 0.91830 1.03091 1.20695 0.85269 0.88555 1.07320 1.74625 1.22995 0.98191 1.16953 1.74272 1.13528 1.09629 1.20838 1.27726 0.91520 0.90461 0.99050 1.44110 1.11300 1.06898 1.54707 0.70800 1.74540 1.23107 0.91366 1.30769 1.85442 1.26287 1.18292 1.71644 0.87860 0.69039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.92 12.08 21.91 0.26 -37.65 14 2 C 0.03 1.39 5.50 85.42 0.47 1.86 14 3 Si 1.02 33.05 29.57 68.60 2.03 35.07 14 4 H -0.26 -7.92 7.11 99.48 0.71 -7.22 14 5 H -0.26 -7.62 7.11 99.48 0.71 -6.91 14 6 H -0.25 -7.77 7.11 99.48 0.71 -7.06 14 7 C -0.42 -21.80 9.48 23.33 0.22 -21.58 14 8 H 0.13 6.14 7.86 -2.91 -0.02 6.11 14 9 C 0.27 15.77 7.80 85.07 0.66 16.44 14 10 N -0.61 -35.50 11.64 -305.14 -3.55 -39.06 14 11 C 0.23 12.23 8.11 137.27 1.11 13.34 14 12 C 0.25 11.03 8.24 136.48 1.13 12.16 14 13 N -0.28 -12.93 12.26 -50.98 -0.62 -13.55 14 14 N -0.34 -12.41 12.20 -60.00 -0.73 -13.15 14 15 C 0.20 4.84 13.17 180.11 2.37 7.21 14 16 N -0.55 -16.44 6.25 -190.87 -1.19 -17.64 14 17 H 0.45 10.31 8.96 -92.72 -0.83 9.48 14 18 N -0.46 -24.59 12.20 -56.05 -0.68 -25.28 14 19 O 0.03 1.69 9.73 64.34 0.63 2.31 14 20 H 0.31 12.86 8.29 -92.71 -0.77 12.09 14 21 H 0.29 2.41 8.06 -2.91 -0.02 2.39 14 Total: -1.00 -73.20 212.71 2.57 -70.63 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.47 Total: 8.88 kcal Atomic # 6 Polarization: 23.46 SS G_CDS: 5.96 Total: 29.42 kcal Atomic # 7 Polarization: -139.80 SS G_CDS: -6.52 Total: -146.32 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.63 Total: 2.31 kcal Atomic # 14 Polarization: 33.05 SS G_CDS: 2.03 Total: 35.07 kcal Total: -73.20 2.57 -70.63 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236241204.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.579 kcal (2) G-P(sol) polarization free energy of solvation -73.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds