Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20820 * 120.00263 * 2 1 4 4 O 1.34336 * 119.99841 * 179.97438 * 2 1 3 5 5 C 1.35490 * 117.00205 * 180.02562 * 4 2 1 6 6 N 1.32022 * 119.87337 * 0.02562 * 5 4 2 7 7 C 1.31990 * 121.90383 * 179.97438 * 6 5 4 8 8 C 1.38665 * 121.41210 * 359.97438 * 7 6 5 9 9 C 1.38001 * 119.56495 * 0.27769 * 8 7 6 10 10 C 1.41047 * 118.25330 * 359.48275 * 9 8 7 11 11 C 1.41130 * 120.69172 * 180.21608 * 10 9 8 12 12 H 1.08001 * 120.00281 * 203.88089 * 11 10 9 13 13 C 1.39967 * 120.00084 * 23.88181 * 11 10 9 14 14 N 1.30839 * 119.99932 * 17.22682 * 13 11 10 15 15 Si 1.86806 * 120.00030 * 197.22910 * 13 11 10 16 16 H 1.48497 * 109.46851 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47160 * 119.99811 * 15 13 11 18 18 H 1.48501 * 109.46978 * 240.00136 * 15 13 11 19 19 H 1.09000 * 109.47138 * 270.00395 * 1 2 3 20 20 H 1.09005 * 109.46568 * 30.00705 * 1 2 3 21 21 H 1.09001 * 109.47155 * 149.99992 * 1 2 3 22 22 H 1.08002 * 119.29751 * 180.02562 * 7 6 5 23 23 H 1.08002 * 120.21797 * 180.02562 * 8 7 6 24 24 H 1.07997 * 120.87039 * 179.73125 * 9 8 7 25 25 H 0.97002 * 120.00061 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1787 -1.1634 0.0005 5 6 3.5317 -1.0926 0.0010 6 7 4.1286 0.0850 0.0015 7 6 5.4434 0.2007 0.0025 8 6 6.2670 -0.9149 0.0036 9 6 5.7058 -2.1756 -0.0021 10 6 4.2993 -2.2803 0.0023 11 6 3.6710 -3.5441 0.0013 12 1 2.6636 -3.6461 -0.3743 13 6 4.3536 -4.6653 0.4872 14 7 5.4129 -4.5111 1.2394 15 14 3.7520 -6.3819 0.0616 16 1 2.5436 -6.2844 -0.7959 17 1 4.8190 -7.1138 -0.6670 18 1 3.4148 -7.1119 1.3101 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5140 21 1 -0.3633 -0.8900 -0.5138 22 1 5.8873 1.1852 0.0033 23 1 7.3407 -0.7978 0.0049 24 1 6.3273 -3.0588 -0.0057 25 1 5.8858 -5.2882 1.5764 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238121434.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = -38.763778 kcal Electronic energy + Delta-G solvation = -13117.100723 eV Core-core repulsion = 10675.489553 eV Total energy + Delta-G solvation = -2441.611170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16270 -37.84297 -35.71020 -34.15911 -30.63003 -30.31735 -29.04482 -25.57231 -22.99343 -21.47036 -19.86325 -17.46362 -17.16387 -16.32014 -15.67188 -15.18676 -14.23047 -13.98247 -13.41238 -13.06349 -12.73058 -12.17752 -12.07284 -11.86639 -11.53784 -11.40190 -11.06783 -10.74513 -10.61506 -9.99080 -9.79620 -9.45376 -8.24932 -7.83080 -7.46798 -6.91092 -4.49689 2.41389 2.74908 2.99661 3.05776 3.12196 3.25702 3.59085 3.81321 4.53120 5.31875 5.51507 5.55679 5.62879 5.86332 6.10462 6.27568 6.60949 6.80214 6.95792 7.02540 7.36618 7.64858 7.82332 7.87758 8.29279 8.52384 8.57263 9.00924 9.49451 9.98392 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.012333 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301854 B = 2269.846890 C = 3072.016111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.428 3.572 3 O -0.465 6.465 4 O -0.264 6.264 5 C 0.152 3.848 6 N -0.459 5.459 7 C -0.021 4.021 8 C -0.158 4.158 9 C -0.132 4.132 10 C 0.080 3.920 11 C -0.435 4.435 12 H 0.089 0.911 13 C 0.072 3.928 14 N -0.787 5.787 15 Si 0.916 3.084 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.272 1.272 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.088 0.912 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.135 0.865 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 -0.447 -1.493 4.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.269 3.731 3 O -0.348 6.348 4 O -0.173 6.173 5 C -0.028 4.028 6 N -0.177 5.177 7 C -0.178 4.178 8 C -0.179 4.179 9 C -0.158 4.158 10 C 0.075 3.925 11 C -0.464 4.464 12 H 0.107 0.893 13 C -0.147 4.147 14 N -0.412 5.412 15 Si 0.740 3.260 16 H -0.181 1.181 17 H -0.195 1.195 18 H -0.198 1.198 19 H 0.114 0.886 20 H 0.113 0.887 21 H 0.107 0.893 22 H 0.142 0.858 23 H 0.121 0.879 24 H 0.153 0.847 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.681 0.455 -1.351 4.894 hybrid contribution 0.424 -1.434 -0.012 1.495 sum -4.258 -0.979 -1.364 4.577 Atomic orbital electron populations 1.21537 0.88349 1.04943 1.04974 1.23780 0.91384 0.82424 0.75558 1.90740 1.69871 1.32377 1.41853 1.84566 1.17840 1.34710 1.80227 1.19786 0.80515 0.90410 1.12057 1.67167 1.12550 1.25799 1.12232 1.21564 0.87934 0.97131 1.11195 1.21665 0.99005 0.94289 1.02918 1.21499 0.93834 0.96481 1.03974 1.17671 0.91538 0.90926 0.92343 1.19552 1.01445 0.90931 1.34462 0.89280 1.26025 0.94107 1.02146 0.92404 1.69806 1.15817 1.33312 1.22234 0.86125 0.80107 0.80400 0.79413 1.18064 1.19514 1.19755 0.88582 0.88714 0.89346 0.85820 0.87857 0.84715 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.41 36.01 0.38 -1.53 15 2 C 0.43 9.05 8.01 36.01 0.29 9.34 15 3 O -0.47 -11.43 14.83 -18.74 -0.28 -11.70 15 4 O -0.26 -6.45 9.38 -22.47 -0.21 -6.66 15 5 C 0.15 4.13 7.48 -16.26 -0.12 4.01 15 6 N -0.46 -12.43 7.35 -12.61 -0.09 -12.53 15 7 C -0.02 -0.52 11.17 -17.33 -0.19 -0.72 15 8 C -0.16 -3.74 10.08 -39.51 -0.40 -4.14 15 9 C -0.13 -3.40 8.80 -38.60 -0.34 -3.74 15 10 C 0.08 2.18 5.60 -106.53 -0.60 1.59 15 11 C -0.43 -11.33 8.75 -37.84 -0.33 -11.67 15 12 H 0.09 2.25 7.64 -52.49 -0.40 1.85 15 13 C 0.07 1.74 5.18 -17.33 -0.09 1.65 15 14 N -0.79 -19.48 10.92 55.55 0.61 -18.88 15 15 Si 0.92 17.82 29.59 -169.99 -5.03 12.79 15 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 19 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.12 2.67 8.06 -52.49 -0.42 2.25 15 23 H 0.10 2.08 8.06 -52.49 -0.42 1.65 15 24 H 0.14 3.45 6.20 -52.49 -0.33 3.12 15 25 H 0.28 6.31 8.30 -40.82 -0.34 5.97 15 LS Contribution 231.58 15.07 3.49 3.49 Total: -1.00 -31.07 231.58 -4.90 -35.97 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -1.97 Total: 2.73 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.41 Total: -5.21 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.51 Total: -31.40 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.49 Total: -18.36 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.07 -4.90 -35.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238121434.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.796 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds