Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20820 * 120.00263 * 2 1 4 4 O 1.34336 * 119.99841 * 179.97438 * 2 1 3 5 5 C 1.35490 * 117.00205 * 180.02562 * 4 2 1 6 6 N 1.32022 * 119.87337 * 0.02562 * 5 4 2 7 7 C 1.31990 * 121.90383 * 179.97438 * 6 5 4 8 8 C 1.38665 * 121.41210 * 359.97438 * 7 6 5 9 9 C 1.38001 * 119.56495 * 0.27769 * 8 7 6 10 10 C 1.41047 * 118.25330 * 359.48275 * 9 8 7 11 11 C 1.41130 * 120.69172 * 180.21608 * 10 9 8 12 12 H 1.08001 * 120.00281 * 203.88089 * 11 10 9 13 13 C 1.39967 * 120.00084 * 23.88181 * 11 10 9 14 14 N 1.30839 * 119.99932 * 17.22682 * 13 11 10 15 15 Si 1.86806 * 120.00030 * 197.22910 * 13 11 10 16 16 H 1.48497 * 109.46851 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47160 * 119.99811 * 15 13 11 18 18 H 1.48501 * 109.46978 * 240.00136 * 15 13 11 19 19 H 1.09000 * 109.47138 * 270.00395 * 1 2 3 20 20 H 1.09005 * 109.46568 * 30.00705 * 1 2 3 21 21 H 1.09001 * 109.47155 * 149.99992 * 1 2 3 22 22 H 1.08002 * 119.29751 * 180.02562 * 7 6 5 23 23 H 1.08002 * 120.21797 * 180.02562 * 8 7 6 24 24 H 1.07997 * 120.87039 * 179.73125 * 9 8 7 25 25 H 0.97002 * 120.00061 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1787 -1.1634 0.0005 5 6 3.5317 -1.0926 0.0010 6 7 4.1286 0.0850 0.0015 7 6 5.4434 0.2007 0.0025 8 6 6.2670 -0.9149 0.0036 9 6 5.7058 -2.1756 -0.0021 10 6 4.2993 -2.2803 0.0023 11 6 3.6710 -3.5441 0.0013 12 1 2.6636 -3.6461 -0.3743 13 6 4.3536 -4.6653 0.4872 14 7 5.4129 -4.5111 1.2394 15 14 3.7520 -6.3819 0.0616 16 1 2.5436 -6.2844 -0.7959 17 1 4.8190 -7.1138 -0.6670 18 1 3.4148 -7.1119 1.3101 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5140 21 1 -0.3633 -0.8900 -0.5138 22 1 5.8873 1.1852 0.0033 23 1 7.3407 -0.7978 0.0049 24 1 6.3273 -3.0588 -0.0057 25 1 5.8858 -5.2882 1.5764 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238121434.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = -58.898071 kcal Electronic energy + Delta-G solvation = -13117.973812 eV Core-core repulsion = 10675.489553 eV Total energy + Delta-G solvation = -2442.484259 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95191 -39.71344 -37.52271 -36.05284 -32.55425 -31.96638 -30.59971 -27.49073 -24.81286 -23.37130 -21.63967 -19.37059 -18.96011 -18.10476 -17.41301 -16.92770 -15.97182 -15.81552 -15.12074 -14.68802 -14.35502 -13.92990 -13.41243 -13.39951 -13.29155 -13.14812 -12.74465 -12.54823 -12.24649 -11.80266 -11.55550 -11.25897 -10.21796 -9.75089 -9.40046 -8.74881 -6.45875 0.55485 0.89372 1.40902 1.51254 1.53174 1.57799 2.01564 2.19071 2.66232 3.57855 3.76814 4.10899 4.46502 4.52881 4.59772 4.70705 4.85156 4.98194 5.11708 5.14208 5.52905 5.71353 5.94222 6.03458 6.37690 6.59775 6.66670 7.21330 7.54272 8.18629 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.012333 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301854 B = 2269.846890 C = 3072.016111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.417 3.583 3 O -0.507 6.507 4 O -0.277 6.277 5 C 0.123 3.877 6 N -0.481 5.481 7 C -0.035 4.035 8 C -0.150 4.150 9 C -0.151 4.151 10 C 0.051 3.949 11 C -0.461 4.461 12 H 0.086 0.914 13 C 0.035 3.965 14 N -0.812 5.812 15 Si 0.993 3.007 16 H -0.255 1.255 17 H -0.259 1.259 18 H -0.263 1.263 19 H 0.122 0.878 20 H 0.118 0.882 21 H 0.110 0.890 22 H 0.151 0.849 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -1.487 -1.567 5.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.261 3.739 3 O -0.392 6.392 4 O -0.187 6.187 5 C -0.057 4.057 6 N -0.200 5.200 7 C -0.192 4.192 8 C -0.170 4.170 9 C -0.177 4.177 10 C 0.046 3.954 11 C -0.490 4.490 12 H 0.104 0.896 13 C -0.182 4.182 14 N -0.437 5.437 15 Si 0.812 3.188 16 H -0.179 1.179 17 H -0.184 1.184 18 H -0.187 1.187 19 H 0.141 0.859 20 H 0.136 0.864 21 H 0.128 0.872 22 H 0.169 0.831 23 H 0.159 0.841 24 H 0.150 0.850 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.377 -0.570 -1.420 5.591 hybrid contribution 0.663 -1.057 0.046 1.249 sum -4.714 -1.628 -1.374 5.173 Atomic orbital electron populations 1.21712 0.82016 1.07187 1.07277 1.25361 0.93959 0.81006 0.73591 1.90702 1.71319 1.33358 1.43851 1.84575 1.16844 1.36729 1.80538 1.20070 0.81847 0.90547 1.13201 1.67232 1.13761 1.26143 1.12850 1.22137 0.87612 0.98761 1.10729 1.21978 1.00860 0.93144 1.01062 1.21609 0.93611 0.97336 1.05115 1.18088 0.92536 0.91736 0.93001 1.19770 1.01868 0.91697 1.35628 0.89555 1.26932 0.93950 1.05872 0.91417 1.69820 1.16477 1.35276 1.22085 0.84985 0.79702 0.74656 0.79408 1.17878 1.18366 1.18710 0.85949 0.86350 0.87154 0.83126 0.84144 0.85023 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 10.41 71.24 0.74 -2.34 15 2 C 0.42 17.63 8.01 71.24 0.57 18.20 15 3 O -0.51 -25.21 14.83 21.98 0.33 -24.89 15 4 O -0.28 -13.80 9.38 8.63 0.08 -13.72 15 5 C 0.12 6.84 7.48 85.45 0.64 7.48 15 6 N -0.48 -26.53 7.35 -306.91 -2.26 -28.78 15 7 C -0.04 -1.74 11.17 84.77 0.95 -0.79 15 8 C -0.15 -7.04 10.08 22.32 0.22 -6.81 15 9 C -0.15 -7.87 8.80 22.90 0.20 -7.67 15 10 C 0.05 2.87 5.60 -21.10 -0.12 2.75 15 11 C -0.46 -24.41 8.75 23.40 0.20 -24.21 15 12 H 0.09 4.45 7.64 -2.91 -0.02 4.43 15 13 C 0.04 1.69 5.18 85.26 0.44 2.13 15 14 N -0.81 -39.95 10.92 21.83 0.24 -39.71 15 15 Si 0.99 35.57 29.59 68.60 2.03 37.60 15 16 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 17 H -0.26 -8.80 7.11 99.48 0.71 -8.10 15 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 19 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.12 2.39 8.14 -2.38 -0.02 2.37 15 21 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.15 6.36 8.06 -2.91 -0.02 6.34 15 23 H 0.14 5.37 8.06 -2.91 -0.02 5.34 15 24 H 0.13 6.82 6.20 -2.91 -0.02 6.80 15 25 H 0.30 12.88 8.30 -92.71 -0.77 12.11 15 Total: -1.00 -68.83 231.58 5.48 -63.35 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.21 Total: 17.41 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 3.85 Total: -11.27 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -2.02 Total: -68.49 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: 0.41 Total: -38.61 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -68.83 5.48 -63.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238121434.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.456 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds