Wall clock time and date at job start Mon Mar 30 2020 01:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00049 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00354 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99695 * 3 2 1 7 7 C 1.40145 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.41202 * 119.99881 * 0.28295 * 7 2 1 10 10 N 1.31925 * 126.53395 * 359.73926 * 9 7 2 11 11 O 1.41312 * 109.37551 * 180.02562 * 10 9 7 12 12 C 1.34942 * 109.71760 * 359.97438 * 11 10 9 13 13 C 1.38969 * 132.96200 * 180.02562 * 12 11 10 14 14 C 1.38083 * 119.92424 * 179.21048 * 13 12 11 15 15 F 1.35096 * 119.75545 * 180.23114 * 14 13 12 16 16 C 1.38927 * 120.48328 * 0.68760 * 14 13 12 17 17 C 1.37768 * 120.26777 * 359.54490 * 16 14 13 18 18 C 1.39286 * 119.75472 * 0.02562 * 17 16 14 19 19 H 0.97005 * 120.00029 * 359.97438 * 1 2 3 20 20 H 1.07994 * 120.03791 * 359.96688 * 13 12 11 21 21 H 1.08007 * 119.86261 * 179.55747 * 16 14 13 22 22 H 1.07990 * 120.12208 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4403 0.7001 7 6 2.0075 -1.2137 0.0005 8 1 3.0875 -1.2136 0.0001 9 6 1.3015 -2.4365 -0.0049 10 7 -0.0091 -2.5867 -0.0060 11 8 -0.3232 -3.9644 -0.0115 12 6 0.8142 -4.6906 -0.0144 13 6 1.0652 -6.0575 -0.0203 14 6 2.3665 -6.5188 -0.0385 15 9 2.6065 -7.8482 -0.0489 16 6 3.4309 -5.6259 -0.0367 17 6 3.1982 -4.2681 -0.0261 18 6 1.8896 -3.7910 -0.0167 19 1 -0.4850 0.8401 0.0004 20 1 0.2433 -6.7580 -0.0229 21 1 4.4449 -5.9978 -0.0439 22 1 4.0272 -3.5761 -0.0252 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620297.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:49 Heat of formation + Delta-G solvation = -21.373385 kcal Electronic energy + Delta-G solvation = -12555.337830 eV Core-core repulsion = 9991.020458 eV Total energy + Delta-G solvation = -2564.317371 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.97944 -41.83979 -37.98268 -36.14075 -33.54202 -31.28274 -30.14151 -28.37032 -24.09878 -23.44692 -22.29719 -19.46260 -18.08654 -17.96806 -17.43372 -16.79761 -16.70373 -16.00732 -15.58801 -15.12268 -14.56772 -14.20585 -13.84447 -13.11537 -12.97081 -12.81918 -12.65038 -12.05921 -11.95074 -11.84894 -11.21495 -10.82811 -9.56908 -9.44967 -8.71786 -6.96904 -0.11088 0.33823 1.32777 1.42227 1.60252 1.89115 2.17985 2.35079 2.57773 3.24349 3.31658 3.82948 3.89785 4.02672 4.08425 4.45848 4.88574 5.00471 5.03534 5.14720 5.18314 5.40623 5.82931 6.06798 6.41700 6.60383 7.44310 8.27016 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.061607 B = 0.008988 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.383816 B = 3114.507548 C = 3559.033608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.015 3.985 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.438 4.438 8 H 0.120 0.880 9 C 0.186 3.814 10 N -0.410 5.410 11 O -0.186 6.186 12 C 0.080 3.920 13 C -0.194 4.194 14 C 0.142 3.858 15 F -0.129 7.129 16 C -0.187 4.187 17 C -0.015 4.015 18 C -0.213 4.213 19 H 0.292 0.708 20 H 0.150 0.850 21 H 0.178 0.822 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.205 -4.209 -0.045 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.205 4.205 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.164 1.164 7 C -0.477 4.477 8 H 0.137 0.863 9 C 0.031 3.969 10 N -0.188 5.188 11 O -0.180 6.180 12 C 0.025 3.975 13 C -0.215 4.215 14 C 0.122 3.878 15 F -0.108 7.108 16 C -0.206 4.206 17 C -0.034 4.034 18 C -0.216 4.216 19 H 0.102 0.898 20 H 0.168 0.832 21 H 0.196 0.804 22 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.760 -3.850 -0.041 8.663 hybrid contribution 0.208 0.054 -0.017 0.215 sum 7.968 -3.796 -0.058 8.826 Atomic orbital electron populations 1.69943 1.09812 1.31203 1.30879 1.27321 0.95760 1.05861 0.91565 0.84770 0.78923 0.73633 0.79803 1.18310 1.19637 1.16360 1.19521 0.95759 0.87559 1.44865 0.86265 1.21670 0.90641 0.92881 0.91668 1.81312 1.13986 0.80214 1.43308 1.88977 1.27830 1.18726 1.82453 1.20421 0.88458 0.93622 0.94986 1.19824 0.97497 0.91231 1.12912 1.17224 0.92653 0.77587 1.00364 1.91493 1.95009 1.30561 1.93724 1.21163 0.99823 0.91537 1.08048 1.20765 0.94379 0.95524 0.92714 1.21512 0.96165 0.92233 1.11715 0.89762 0.83234 0.80435 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.48 11.97 21.86 0.26 -43.22 14 2 C 0.02 0.75 5.50 85.33 0.47 1.22 14 3 Si 1.01 35.61 29.56 68.60 2.03 37.63 14 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 14 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 14 6 H -0.24 -7.72 7.11 99.48 0.71 -7.01 14 7 C -0.44 -22.49 9.44 23.46 0.22 -22.26 14 8 H 0.12 5.25 7.85 -2.91 -0.02 5.23 14 9 C 0.19 10.39 6.95 42.35 0.29 10.68 14 10 N -0.41 -25.33 11.13 -48.34 -0.54 -25.87 14 11 O -0.19 -10.68 12.04 28.72 0.35 -10.33 14 12 C 0.08 3.88 7.45 22.92 0.17 4.05 14 13 C -0.19 -7.45 10.04 22.41 0.22 -7.22 14 14 C 0.14 4.62 7.29 22.40 0.16 4.78 14 15 F -0.13 -3.76 17.26 44.97 0.78 -2.98 14 16 C -0.19 -5.51 10.01 22.32 0.22 -5.28 14 17 C -0.01 -0.51 10.09 22.41 0.23 -0.29 14 18 C -0.21 -10.09 6.30 -20.06 -0.13 -10.21 14 19 H 0.29 14.34 8.29 -92.70 -0.77 13.57 14 20 H 0.15 5.07 8.06 -2.91 -0.02 5.05 14 21 H 0.18 3.64 8.06 -2.91 -0.02 3.62 14 22 H 0.16 4.69 8.06 -2.92 -0.02 4.66 14 Total: -1.00 -66.86 216.66 6.00 -60.86 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.26 Total: 8.44 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 1.87 Total: -24.53 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.28 Total: -69.09 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.35 Total: -10.33 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.63 kcal Total: -66.86 6.00 -60.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620297.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.491 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds