Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48494 * 109.47009 * 85.64724 * 3 2 1 5 5 H 1.48508 * 109.46934 * 205.64859 * 3 2 1 6 6 H 1.48507 * 109.47131 * 325.64465 * 3 2 1 7 7 C 1.39848 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99835 * 163.48386 * 7 2 1 9 9 C 1.40952 * 120.00542 * 343.47945 * 7 2 1 10 10 C 1.40878 * 120.24901 * 333.63179 * 9 7 2 11 11 C 1.36246 * 120.09412 * 179.78853 * 10 9 7 12 12 C 1.39564 * 120.65720 * 0.48198 * 11 10 9 13 13 C 1.39279 * 120.26394 * 359.76472 * 12 11 10 14 14 C 1.38749 * 119.96211 * 359.97438 * 13 12 11 15 15 N 1.39135 * 120.24043 * 180.02562 * 14 13 12 16 16 O 1.36654 * 108.66187 * 180.02562 * 13 12 11 17 17 C 1.43984 * 105.40668 * 17.29194 * 16 13 12 18 18 O 1.36413 * 131.15270 * 179.73970 * 12 11 10 19 19 H 0.96996 * 120.00115 * 359.97438 * 1 2 3 20 20 H 1.08008 * 119.94940 * 0.03331 * 10 9 7 21 21 H 1.08000 * 119.67365 * 180.27849 * 11 10 9 22 22 H 0.96996 * 120.00053 * 179.97438 * 15 14 13 23 23 H 0.96997 * 119.99234 * 359.97438 * 15 14 13 24 24 H 1.09004 * 110.57204 * 91.40096 * 17 16 13 25 25 H 1.08993 * 110.57475 * 214.28039 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 2.3989 2.0996 1.3960 5 1 3.5840 1.4154 -0.6061 6 1 1.4899 2.6244 -0.7901 7 6 2.0088 -1.2111 -0.0005 8 1 3.0554 -1.2303 -0.2665 9 6 1.3478 -2.4068 0.3460 10 6 0.2232 -2.3760 1.1940 11 6 -0.4159 -3.5332 1.5235 12 6 0.0375 -4.7601 1.0367 13 6 1.1503 -4.8157 0.2009 14 6 1.8119 -3.6479 -0.1507 15 7 2.9238 -3.6966 -0.9856 16 8 1.3828 -6.1206 -0.1315 17 6 0.1610 -6.8173 0.1766 18 8 -0.4260 -6.0287 1.2284 19 1 -0.4850 0.8400 0.0004 20 1 -0.1351 -1.4331 1.5803 21 1 -1.2801 -3.5012 2.1705 22 1 3.3834 -2.8780 -1.2295 23 1 3.2392 -4.5493 -1.3238 24 1 -0.4947 -6.8441 -0.6938 25 1 0.3739 -7.8268 0.5283 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238660178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = -43.880157 kcal Electronic energy + Delta-G solvation = -13252.333077 eV Core-core repulsion = 10810.500044 eV Total energy + Delta-G solvation = -2441.833033 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74730 -37.02470 -35.12184 -33.41086 -32.71866 -29.02811 -27.41010 -25.52979 -24.15770 -21.45704 -20.68728 -17.93479 -16.75079 -16.53126 -16.01654 -15.36114 -14.75385 -14.59588 -13.84132 -13.14690 -12.95898 -12.28532 -12.04791 -11.79974 -11.61934 -11.19697 -11.03949 -10.79733 -10.30119 -10.07538 -9.65414 -9.22859 -8.91243 -6.94080 -6.78595 -6.31442 -4.20862 2.62857 2.97982 3.07247 3.10199 3.13545 3.87902 4.02026 4.53467 4.61966 5.13050 5.46728 5.56594 5.63393 6.17495 6.44161 6.59875 6.85320 7.03066 7.19037 7.31596 7.61332 7.82171 7.95905 8.27344 8.41494 8.67674 8.75492 8.97923 9.03525 10.21010 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.057487 B = 0.010157 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.952535 B = 2756.042577 C = 3153.864731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.456 4.456 8 H 0.076 0.924 9 C 0.072 3.928 10 C -0.135 4.135 11 C -0.114 4.114 12 C -0.061 4.061 13 C -0.038 4.038 14 C 0.144 3.856 15 N -0.880 5.880 16 O -0.328 6.328 17 C 0.219 3.781 18 O -0.326 6.326 19 H 0.280 0.720 20 H 0.132 0.868 21 H 0.098 0.902 22 H 0.394 0.606 23 H 0.382 0.618 24 H 0.059 0.941 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -3.354 -0.721 3.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.487 4.487 8 H 0.094 0.906 9 C 0.067 3.933 10 C -0.156 4.156 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.086 4.086 14 C 0.042 3.958 15 N -0.423 5.423 16 O -0.246 6.246 17 C 0.106 3.894 18 O -0.243 6.243 19 H 0.091 0.909 20 H 0.149 0.851 21 H 0.116 0.884 22 H 0.223 0.777 23 H 0.208 0.792 24 H 0.077 0.923 25 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.311 -3.368 -0.613 3.666 hybrid contribution 0.461 0.477 -0.395 0.772 sum 1.773 -2.891 -1.008 3.538 Atomic orbital electron populations 1.69857 1.07372 1.29091 1.36076 1.25792 0.94757 1.01036 0.92630 0.86269 0.80342 0.80776 0.79099 1.19415 1.18767 1.20411 1.19078 0.97131 0.90650 1.41826 0.90585 1.17035 0.94085 0.89414 0.92786 1.20588 0.98726 0.96146 1.00095 1.19335 1.01277 0.88461 1.04347 1.19168 0.98616 0.84629 1.08092 1.18831 1.00881 0.82812 1.06065 1.17038 0.92478 0.89596 0.96728 1.41835 1.33437 1.09860 1.57144 1.87151 1.35260 1.17929 1.84244 1.25055 0.81651 0.93869 0.88874 1.87106 1.69738 1.18105 1.49380 0.90908 0.85054 0.88375 0.77690 0.79212 0.92334 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.03 11.00 55.54 0.61 -19.42 15 2 C 0.07 1.80 5.15 -17.32 -0.09 1.72 15 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 15 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.26 -5.16 7.11 56.52 0.40 -4.75 15 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.46 -11.50 8.48 -37.95 -0.32 -11.82 15 8 H 0.08 1.80 6.70 -52.48 -0.35 1.45 15 9 C 0.07 1.87 5.57 -106.63 -0.59 1.28 15 10 C -0.13 -3.46 8.61 -39.30 -0.34 -3.80 15 11 C -0.11 -2.79 9.98 -39.80 -0.40 -3.19 15 12 C -0.06 -1.51 7.17 -38.70 -0.28 -1.78 15 13 C -0.04 -0.94 6.98 -39.01 -0.27 -1.21 15 14 C 0.14 3.54 6.80 -83.11 -0.56 2.98 15 15 N -0.88 -18.29 9.00 32.79 0.29 -18.00 15 16 O -0.33 -7.19 11.40 -46.20 -0.53 -7.71 15 17 C 0.22 4.03 8.89 101.05 0.90 4.93 15 18 O -0.33 -7.26 11.39 -45.41 -0.52 -7.78 15 19 H 0.28 6.42 8.30 -40.82 -0.34 6.08 15 20 H 0.13 3.41 6.24 -52.48 -0.33 3.08 15 21 H 0.10 2.17 8.06 -52.49 -0.42 1.75 15 22 H 0.39 7.72 7.06 -40.82 -0.29 7.43 15 23 H 0.38 7.11 8.82 -40.82 -0.36 6.75 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.11 1.51 8.14 -51.93 -0.42 1.09 15 LS Contribution 222.78 15.07 3.36 3.36 Total: -1.00 -28.45 222.78 -5.50 -33.95 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -1.73 Total: 13.44 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.96 Total: -10.90 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.91 Total: -37.42 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.04 Total: -15.49 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.45 -5.50 -33.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.933 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds