Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48494 * 109.47009 * 85.64724 * 3 2 1 5 5 H 1.48508 * 109.46934 * 205.64859 * 3 2 1 6 6 H 1.48507 * 109.47131 * 325.64465 * 3 2 1 7 7 C 1.39848 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99835 * 163.48386 * 7 2 1 9 9 C 1.40952 * 120.00542 * 343.47945 * 7 2 1 10 10 C 1.40878 * 120.24901 * 333.63179 * 9 7 2 11 11 C 1.36246 * 120.09412 * 179.78853 * 10 9 7 12 12 C 1.39564 * 120.65720 * 0.48198 * 11 10 9 13 13 C 1.39279 * 120.26394 * 359.76472 * 12 11 10 14 14 C 1.38749 * 119.96211 * 359.97438 * 13 12 11 15 15 N 1.39135 * 120.24043 * 180.02562 * 14 13 12 16 16 O 1.36654 * 108.66187 * 180.02562 * 13 12 11 17 17 C 1.43984 * 105.40668 * 17.29194 * 16 13 12 18 18 O 1.36413 * 131.15270 * 179.73970 * 12 11 10 19 19 H 0.96996 * 120.00115 * 359.97438 * 1 2 3 20 20 H 1.08008 * 119.94940 * 0.03331 * 10 9 7 21 21 H 1.08000 * 119.67365 * 180.27849 * 11 10 9 22 22 H 0.96996 * 120.00053 * 179.97438 * 15 14 13 23 23 H 0.96997 * 119.99234 * 359.97438 * 15 14 13 24 24 H 1.09004 * 110.57204 * 91.40096 * 17 16 13 25 25 H 1.08993 * 110.57475 * 214.28039 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 2.3989 2.0996 1.3960 5 1 3.5840 1.4154 -0.6061 6 1 1.4899 2.6244 -0.7901 7 6 2.0088 -1.2111 -0.0005 8 1 3.0554 -1.2303 -0.2665 9 6 1.3478 -2.4068 0.3460 10 6 0.2232 -2.3760 1.1940 11 6 -0.4159 -3.5332 1.5235 12 6 0.0375 -4.7601 1.0367 13 6 1.1503 -4.8157 0.2009 14 6 1.8119 -3.6479 -0.1507 15 7 2.9238 -3.6966 -0.9856 16 8 1.3828 -6.1206 -0.1315 17 6 0.1610 -6.8173 0.1766 18 8 -0.4260 -6.0287 1.2284 19 1 -0.4850 0.8400 0.0004 20 1 -0.1351 -1.4331 1.5803 21 1 -1.2801 -3.5012 2.1705 22 1 3.3834 -2.8780 -1.2295 23 1 3.2392 -4.5493 -1.3238 24 1 -0.4947 -6.8441 -0.6938 25 1 0.3739 -7.8268 0.5283 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238660178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = -63.301203 kcal Electronic energy + Delta-G solvation = -13253.175237 eV Core-core repulsion = 10810.500044 eV Total energy + Delta-G solvation = -2442.675193 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.46749 -38.84723 -36.84620 -35.23636 -34.51150 -30.87246 -29.21566 -27.24917 -25.86647 -23.30516 -22.52782 -19.75359 -18.48898 -18.26677 -17.73345 -17.15547 -16.36551 -16.29589 -15.62684 -14.86269 -14.70782 -14.10955 -13.79256 -13.52270 -13.37279 -12.85822 -12.74886 -12.55368 -12.00609 -11.73662 -11.48676 -11.02707 -10.73273 -8.80917 -8.60146 -8.12177 -6.10659 0.78063 1.09293 1.45726 1.53267 1.58421 2.20561 2.33024 2.74630 3.02804 3.42561 3.65225 4.07999 4.25008 4.36537 4.67176 4.77852 5.02702 5.20293 5.34318 5.47036 5.75464 5.94860 6.03584 6.41676 6.60339 6.81756 6.91165 7.14895 7.38829 8.41818 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.057487 B = 0.010157 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.952535 B = 2756.042577 C = 3153.864731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.256 1.256 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.085 0.915 9 C 0.045 3.955 10 C -0.153 4.153 11 C -0.125 4.125 12 C -0.071 4.071 13 C -0.049 4.049 14 C 0.133 3.867 15 N -0.867 5.867 16 O -0.333 6.333 17 C 0.208 3.792 18 O -0.335 6.335 19 H 0.287 0.713 20 H 0.121 0.879 21 H 0.113 0.887 22 H 0.400 0.600 23 H 0.394 0.606 24 H 0.079 0.921 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -3.549 -1.138 4.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.199 1.199 7 C -0.509 4.509 8 H 0.102 0.898 9 C 0.040 3.960 10 C -0.174 4.174 11 C -0.145 4.145 12 C -0.116 4.116 13 C -0.098 4.098 14 C 0.029 3.971 15 N -0.411 5.411 16 O -0.251 6.251 17 C 0.097 3.903 18 O -0.253 6.253 19 H 0.098 0.902 20 H 0.139 0.861 21 H 0.131 0.869 22 H 0.230 0.770 23 H 0.221 0.779 24 H 0.097 0.903 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.003 -3.598 -1.047 4.249 hybrid contribution 0.208 0.409 -0.291 0.543 sum 2.210 -3.190 -1.338 4.105 Atomic orbital electron populations 1.69916 1.08898 1.30436 1.36289 1.26655 0.95454 1.04228 0.91605 0.85146 0.79100 0.76084 0.79083 1.19149 1.17939 1.19857 1.19369 0.97654 0.91222 1.42694 0.89752 1.17373 0.94685 0.90523 0.93415 1.20563 0.99572 0.96187 1.01046 1.19488 1.01802 0.88470 1.04730 1.19348 0.98854 0.85456 1.07899 1.18970 1.00861 0.83814 1.06128 1.17178 0.93329 0.89481 0.97081 1.41730 1.32340 1.10839 1.56219 1.87119 1.36947 1.16748 1.84276 1.25684 0.80749 0.94767 0.89125 1.87071 1.70108 1.17278 1.50871 0.90219 0.86134 0.86871 0.77031 0.77872 0.90311 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.90 11.00 21.82 0.24 -41.66 15 2 C 0.03 1.67 5.15 85.21 0.44 2.11 15 3 Si 0.98 36.48 29.59 68.60 2.03 38.51 15 4 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 6 H -0.27 -9.83 7.11 99.48 0.71 -9.13 15 7 C -0.48 -24.16 8.48 23.32 0.20 -23.96 15 8 H 0.08 3.96 6.70 -2.91 -0.02 3.94 15 9 C 0.05 2.38 5.57 -21.16 -0.12 2.26 15 10 C -0.15 -8.02 8.61 22.45 0.19 -7.83 15 11 C -0.12 -6.17 9.98 22.13 0.22 -5.95 15 12 C -0.07 -3.48 7.17 22.84 0.16 -3.32 15 13 C -0.05 -2.38 6.98 22.64 0.16 -2.22 15 14 C 0.13 6.51 6.80 38.91 0.26 6.77 15 15 N -0.87 -35.26 9.00 -50.18 -0.45 -35.71 15 16 O -0.33 -13.95 11.40 -77.87 -0.89 -14.84 15 17 C 0.21 7.11 8.89 113.37 1.01 8.11 15 18 O -0.34 -14.43 11.39 -75.02 -0.85 -15.28 15 19 H 0.29 13.18 8.30 -92.71 -0.77 12.41 15 20 H 0.12 6.46 6.24 -2.91 -0.02 6.45 15 21 H 0.11 5.06 8.06 -2.91 -0.02 5.04 15 22 H 0.40 15.29 7.06 -92.71 -0.65 14.63 15 23 H 0.39 14.09 8.82 -92.71 -0.82 13.27 15 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.15 3.74 8.14 -2.39 -0.02 3.72 15 Total: -1.00 -60.07 222.78 2.38 -57.69 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.22 Total: 35.31 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 2.53 Total: -24.02 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -0.21 Total: -77.37 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.74 Total: -30.12 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -60.07 2.38 -57.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.614 kcal (2) G-P(sol) polarization free energy of solvation -60.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds