Wall clock time and date at job start Mon Mar 30 2020 02:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48498 * 109.46858 * 270.00213 * 3 2 1 5 5 H 1.48495 * 109.47274 * 30.00038 * 3 2 1 6 6 H 1.48495 * 109.46793 * 150.00625 * 3 2 1 7 7 C 1.38793 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99581 * 359.97438 * 7 2 1 9 9 N 1.36845 * 119.99791 * 180.02562 * 7 2 1 10 10 C 1.39335 * 119.99434 * 179.97438 * 9 7 2 11 11 C 1.39193 * 120.01923 * 359.97048 * 10 9 7 12 12 C 1.38157 * 120.21523 * 180.02562 * 11 10 9 13 13 C 1.38054 * 120.24960 * 359.96509 * 12 11 10 14 14 C 1.39674 * 120.02756 * 0.03710 * 13 12 11 15 15 C 1.47746 * 120.10576 * 180.02562 * 14 13 12 16 16 O 1.21472 * 119.99861 * 179.97438 * 15 14 13 17 17 O 1.34705 * 120.00211 * 359.97438 * 15 14 13 18 18 C 1.38795 * 120.01381 * 179.97438 * 10 9 7 19 19 H 0.96998 * 119.99995 * 359.97438 * 1 2 3 20 20 H 0.96998 * 120.00488 * 359.97438 * 9 7 2 21 21 H 1.08000 * 119.89650 * 0.03061 * 11 10 9 22 22 H 1.08000 * 119.87951 * 179.97438 * 12 11 10 23 23 H 1.08001 * 119.99046 * 180.02562 * 13 12 11 24 24 H 0.96704 * 116.99807 * 180.02562 * 17 15 14 25 25 H 1.08002 * 120.12409 * 359.70592 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5475 1.4402 0.6999 7 6 2.0099 -1.2020 -0.0005 8 1 1.4699 -2.1372 -0.0005 9 7 3.3784 -1.2019 0.0000 10 6 4.0750 -2.4086 0.0000 11 6 3.3794 -3.6143 0.0001 12 6 4.0660 -4.8131 0.0006 13 6 5.4465 -4.8239 0.0003 14 6 6.1549 -3.6201 0.0003 15 6 7.6323 -3.6297 -0.0006 16 8 8.2465 -2.5816 -0.0011 17 8 8.2984 -4.8006 -0.0008 18 6 5.4630 -2.4090 0.0000 19 1 -0.4850 0.8400 0.0004 20 1 3.8634 -0.3619 0.0004 21 1 2.2994 -3.6126 -0.0004 22 1 3.5208 -5.7454 0.0011 23 1 5.9790 -5.7635 0.0003 24 1 9.2644 -4.7561 -0.0010 25 1 6.0053 -1.4750 -0.0048 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238676910.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:25 Heat of formation + Delta-G solvation = -82.147408 kcal Electronic energy + Delta-G solvation = -12614.298839 eV Core-core repulsion = 10170.806413 eV Total energy + Delta-G solvation = -2443.492426 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29390 -39.84779 -37.02713 -36.83100 -34.03253 -32.00295 -30.36736 -26.36139 -25.42589 -22.97954 -21.85192 -19.99840 -19.07563 -18.56652 -16.90726 -16.77637 -16.57347 -16.39491 -15.46577 -14.89969 -14.49149 -14.30223 -14.18067 -13.93529 -13.07844 -12.77066 -12.55666 -12.38047 -12.06016 -11.97954 -11.89558 -11.48374 -10.75725 -9.85525 -8.73439 -8.44028 -5.79359 -0.10207 0.76954 1.28132 1.31138 1.35488 1.70640 2.12631 2.17948 2.85596 3.10548 3.27557 4.10392 4.22526 4.38391 4.57886 4.76549 4.95783 5.06454 5.42894 5.48190 5.56344 5.68480 5.79854 5.89371 6.17541 6.63865 7.05305 7.33584 7.39632 8.70994 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.048152 B = 0.008337 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.350041 B = 3357.687588 C = 3929.196804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.015 4.015 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.306 4.306 8 H 0.093 0.907 9 N -0.612 5.612 10 C 0.188 3.812 11 C -0.192 4.192 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.089 4.089 15 C 0.539 3.461 16 O -0.554 6.554 17 O -0.497 6.497 18 C -0.180 4.180 19 H 0.277 0.723 20 H 0.383 0.617 21 H 0.112 0.888 22 H 0.152 0.848 23 H 0.152 0.848 24 H 0.431 0.569 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -7.715 0.008 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.214 4.214 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.435 4.435 8 H 0.110 0.890 9 N -0.223 5.223 10 C 0.075 3.925 11 C -0.217 4.217 12 C -0.089 4.089 13 C -0.175 4.175 14 C -0.091 4.091 15 C 0.385 3.615 16 O -0.447 6.447 17 O -0.310 6.310 18 C -0.204 4.204 19 H 0.086 0.914 20 H 0.218 0.782 21 H 0.130 0.870 22 H 0.169 0.831 23 H 0.170 0.830 24 H 0.293 0.707 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.480 -7.255 0.008 13.581 hybrid contribution 0.555 1.460 0.004 1.562 sum 12.035 -5.796 0.012 13.358 Atomic orbital electron populations 1.69803 1.07157 1.28773 1.51254 1.25697 0.96268 1.01696 0.97739 0.85596 0.79081 0.79110 0.79359 1.18965 1.19986 1.17683 1.19288 0.80675 0.95844 1.47692 0.88959 1.41004 1.05016 1.04279 1.72008 1.17856 0.90644 0.87199 0.96839 1.21014 0.99934 0.91664 1.09049 1.21083 0.94051 0.97306 0.96481 1.21141 0.93896 0.96849 1.05603 1.18709 0.88524 0.94665 1.07156 1.20932 0.88881 0.80912 0.70766 1.90837 1.70556 1.34810 1.48459 1.84531 1.28455 1.33002 1.85032 1.20389 0.91561 0.97757 1.10723 0.91381 0.78241 0.86959 0.83054 0.82994 0.70700 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 13.97 21.65 0.30 -53.19 15 2 C -0.02 -0.81 5.50 84.86 0.47 -0.35 15 3 Si 0.95 40.64 27.74 68.60 1.90 42.54 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 15 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 6 H -0.25 -10.06 6.52 99.48 0.65 -9.41 15 7 C -0.31 -16.30 10.04 84.04 0.84 -15.46 15 8 H 0.09 5.25 5.90 -2.91 -0.02 5.24 15 9 N -0.61 -28.65 5.24 -184.40 -0.97 -29.61 15 10 C 0.19 8.01 6.61 38.31 0.25 8.27 15 11 C -0.19 -7.59 9.30 22.48 0.21 -7.38 15 12 C -0.07 -2.18 10.02 22.21 0.22 -1.96 15 13 C -0.15 -4.47 9.62 22.57 0.22 -4.25 15 14 C -0.09 -2.96 5.87 -20.12 -0.12 -3.08 15 15 C 0.54 16.14 8.27 70.34 0.58 16.72 15 16 O -0.55 -19.75 17.13 19.93 0.34 -19.41 15 17 O -0.50 -10.09 12.67 -56.14 -0.71 -10.80 15 18 C -0.18 -6.95 9.44 22.70 0.21 -6.73 15 19 H 0.28 14.86 8.31 -92.71 -0.77 14.09 15 20 H 0.38 16.81 5.76 -92.71 -0.53 16.28 15 21 H 0.11 4.78 5.94 -2.91 -0.02 4.76 15 22 H 0.15 3.59 8.06 -2.91 -0.02 3.57 15 23 H 0.15 3.47 7.60 -2.91 -0.02 3.45 15 24 H 0.43 4.30 9.11 -74.05 -0.67 3.62 15 25 H 0.12 4.52 7.65 -2.91 -0.02 4.50 15 Total: -1.00 -63.66 230.48 3.74 -59.92 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.02 Total: 24.77 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 2.89 Total: -14.22 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -0.66 Total: -82.80 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.37 Total: -30.21 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.90 Total: 42.54 kcal Total: -63.66 3.74 -59.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238676910.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.223 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds