Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30545 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47170 * 300.00126 * 3 2 1 6 6 H 1.48504 * 109.47163 * 60.00131 * 3 2 1 7 7 C 1.40320 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.41790 * 119.99851 * 0.27477 * 7 2 1 10 10 O 1.21844 * 120.00447 * 359.72484 * 9 7 2 11 11 C 1.47423 * 119.99792 * 179.72317 * 9 7 2 12 12 C 1.39861 * 120.22676 * 354.18574 * 11 9 7 13 13 C 1.37650 * 119.92314 * 179.97438 * 12 11 9 14 14 C 1.38790 * 120.38505 * 0.02972 * 13 12 11 15 15 C 1.37938 * 120.45893 * 359.97018 * 14 13 12 16 16 C 1.38976 * 120.06627 * 359.74518 * 15 14 13 17 17 N 1.38718 * 120.19153 * 180.25391 * 16 15 14 18 18 O 1.41599 * 120.00081 * 335.39015 * 17 16 15 19 19 H 0.97003 * 119.99882 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.04125 * 359.96014 * 12 11 9 21 21 H 1.07999 * 119.80540 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.77084 * 179.97438 * 14 13 12 23 23 H 1.08007 * 119.96976 * 180.02562 * 15 14 13 24 24 H 0.97011 * 119.99874 * 155.38779 * 17 16 15 25 25 H 0.96707 * 113.99333 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.6995 1.3463 -0.0006 5 1 1.8807 2.3965 -1.2125 6 1 1.8807 2.3964 1.2125 7 6 2.0070 -1.2152 -0.0005 8 1 3.0871 -1.2153 -0.0010 9 6 1.2981 -2.4431 -0.0070 10 8 0.0796 -2.4432 -0.0070 11 6 2.0352 -3.7198 -0.0137 12 6 3.4284 -3.7278 -0.1362 13 6 4.1104 -4.9234 -0.1413 14 6 3.4235 -6.1239 -0.0260 15 6 2.0496 -6.1345 0.0957 16 6 1.3425 -4.9381 0.1089 17 7 -0.0388 -4.9455 0.2364 18 8 -0.7802 -6.0851 -0.1592 19 1 -0.4850 0.8401 0.0004 20 1 3.9685 -2.7970 -0.2270 21 1 5.1862 -4.9274 -0.2364 22 1 3.9686 -7.0563 -0.0315 23 1 1.5231 -7.0733 0.1853 24 1 -0.4968 -4.1699 0.5966 25 1 -1.7348 -5.9967 -0.0324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238712795.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = -32.784512 kcal Electronic energy + Delta-G solvation = -12998.784464 eV Core-core repulsion = 10557.432574 eV Total energy + Delta-G solvation = -2441.351890 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.42323 -38.09809 -37.47132 -34.82739 -33.29092 -32.06862 -29.21639 -28.21689 -24.45935 -22.84030 -21.54147 -19.38045 -18.53573 -18.17955 -17.28019 -16.12035 -15.78284 -15.19695 -14.87381 -14.80278 -14.57059 -14.00961 -13.90290 -13.27425 -13.06359 -12.70850 -12.65721 -12.31923 -12.04083 -11.80087 -11.00499 -10.75389 -9.63446 -9.54595 -8.36128 -8.22823 -7.04076 0.33890 0.73838 1.37921 1.39773 1.57434 1.64147 2.21889 2.27521 3.00350 3.74689 4.13470 4.16463 4.41599 4.51070 4.70403 4.86655 5.10834 5.20253 5.31745 5.61373 5.70413 5.82423 5.99762 6.09466 6.55884 6.72609 6.76880 7.31497 8.23576 8.48041 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.038836 B = 0.010791 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.800917 B = 2594.195659 C = 3297.841998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.026 3.974 3 Si 0.993 3.007 4 H -0.244 1.244 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.094 0.906 9 C 0.373 3.627 10 O -0.592 6.592 11 C -0.221 4.221 12 C -0.057 4.057 13 C -0.181 4.181 14 C -0.070 4.070 15 C -0.202 4.202 16 C 0.227 3.773 17 N -0.611 5.611 18 O -0.350 6.350 19 H 0.281 0.719 20 H 0.133 0.867 21 H 0.153 0.847 22 H 0.157 0.843 23 H 0.127 0.873 24 H 0.419 0.581 25 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -5.683 0.697 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.193 4.193 3 Si 0.812 3.188 4 H -0.167 1.167 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.112 0.888 9 C 0.275 3.725 10 O -0.487 6.487 11 C -0.227 4.227 12 C -0.076 4.076 13 C -0.201 4.201 14 C -0.088 4.088 15 C -0.225 4.225 16 C 0.124 3.876 17 N -0.295 5.295 18 O -0.248 6.248 19 H 0.092 0.908 20 H 0.150 0.850 21 H 0.171 0.829 22 H 0.175 0.825 23 H 0.145 0.855 24 H 0.269 0.731 25 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.592 -5.997 0.508 8.215 hybrid contribution -1.079 1.000 0.170 1.481 sum 4.513 -4.997 0.678 6.767 Atomic orbital electron populations 1.70087 1.09788 1.29704 1.31840 1.27214 0.95521 1.05408 0.91204 0.85025 0.79771 0.75179 0.78802 1.16689 1.19143 1.18992 1.21434 0.96189 0.92186 1.47378 0.88843 1.18620 0.88076 0.88105 0.77698 1.90195 1.16796 1.88690 1.52984 1.21232 0.96204 0.94323 1.10925 1.21410 0.91701 0.99492 0.94958 1.21248 1.01045 0.91414 1.06365 1.21373 0.92625 0.99252 0.95596 1.20862 0.95349 0.95887 1.10386 1.18122 0.81183 0.94071 0.94267 1.45748 1.01620 1.10455 1.71716 1.88760 1.23894 1.24536 1.87606 0.90847 0.84953 0.82912 0.82524 0.85540 0.73114 0.74927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.40 11.73 21.88 0.26 -45.14 15 2 C 0.03 1.36 5.50 85.39 0.47 1.83 15 3 Si 0.99 38.75 29.56 68.60 2.03 40.78 15 4 H -0.24 -8.83 7.11 99.48 0.71 -8.12 15 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 7 C -0.54 -29.95 8.85 23.66 0.21 -29.74 15 8 H 0.09 4.64 6.06 -2.91 -0.02 4.62 15 9 C 0.37 21.66 6.88 25.57 0.18 21.83 15 10 O -0.59 -37.37 12.38 -4.81 -0.06 -37.43 15 11 C -0.22 -10.89 5.90 -19.87 -0.12 -11.01 15 12 C -0.06 -2.31 9.42 22.52 0.21 -2.10 15 13 C -0.18 -5.80 10.02 22.26 0.22 -5.58 15 14 C -0.07 -2.17 10.03 22.33 0.22 -1.94 15 15 C -0.20 -7.63 9.56 22.38 0.21 -7.42 15 16 C 0.23 10.45 6.66 38.83 0.26 10.71 15 17 N -0.61 -27.61 6.57 -50.81 -0.33 -27.94 15 18 O -0.35 -12.64 14.30 -38.78 -0.55 -13.20 15 19 H 0.28 14.51 8.29 -92.71 -0.77 13.74 15 20 H 0.13 5.11 6.24 -2.91 -0.02 5.09 15 21 H 0.15 3.62 8.06 -2.91 -0.02 3.60 15 22 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 23 H 0.13 4.40 7.68 -2.91 -0.02 4.38 15 24 H 0.42 20.54 6.15 -92.70 -0.57 19.97 15 25 H 0.40 10.02 9.28 -74.05 -0.69 9.33 15 Total: -1.00 -72.05 228.51 3.20 -68.85 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.01 Total: 37.49 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 1.87 Total: -23.42 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -0.08 Total: -73.08 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.61 Total: -50.63 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -72.05 3.20 -68.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238712795.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.069 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds