Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39081 * 120.12970 * 310.80441 * 3 2 1 5 5 C 1.40497 * 119.56826 * 179.73444 * 4 3 2 6 6 C 1.41274 * 120.08450 * 180.29475 * 5 4 3 7 7 H 1.07997 * 119.99970 * 204.81887 * 6 5 4 8 8 C 1.39862 * 120.00072 * 24.80744 * 6 5 4 9 9 N 1.30898 * 119.99830 * 17.83877 * 8 6 5 10 10 Si 1.86796 * 120.00267 * 197.83439 * 8 6 5 11 11 H 1.48497 * 109.47162 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47244 * 120.00395 * 10 8 6 13 13 H 1.48501 * 109.47344 * 240.00487 * 10 8 6 14 14 C 1.40939 * 119.83147 * 0.56613 * 5 4 3 15 15 C 1.36502 * 120.25720 * 359.70156 * 14 5 4 16 16 F 1.35099 * 119.78322 * 180.02562 * 15 14 5 17 17 C 1.39420 * 120.43428 * 0.02562 * 15 14 5 18 18 O 1.35544 * 119.91730 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.21621 * 0.02617 * 4 3 2 20 20 H 0.97002 * 119.99727 * 179.97438 * 9 8 6 21 21 H 1.08006 * 119.87492 * 179.73402 * 14 5 4 22 22 H 0.96699 * 114.00047 * 269.97871 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2664 -0.7851 0.9105 5 6 4.6713 -0.7798 0.8964 6 6 5.3918 -1.5785 1.8123 7 1 6.3988 -1.3056 2.0910 8 6 4.8008 -2.7226 2.3581 9 7 3.7496 -3.2527 1.7859 10 14 5.5114 -3.4941 3.9038 11 1 6.6901 -2.7097 4.3516 12 1 4.4824 -3.4955 4.9745 13 1 5.9265 -4.8903 3.6143 14 6 5.3601 0.0288 -0.0300 15 6 4.6675 0.8015 -0.9168 16 9 5.3375 1.5726 -1.8010 17 6 3.2733 0.8003 -0.9162 18 8 2.5962 1.5712 -1.8019 19 1 2.7324 -1.3990 1.6206 20 1 3.3400 -4.0464 2.1643 21 1 6.4401 0.0367 -0.0386 22 1 2.3991 2.4610 -1.4786 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258070540.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = -51.599403 kcal Electronic energy + Delta-G solvation = -12505.309598 eV Core-core repulsion = 9939.681528 eV Total energy + Delta-G solvation = -2565.628070 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.97733 -38.51639 -36.13445 -35.65049 -33.57835 -30.25891 -29.10566 -25.35136 -22.90849 -21.43552 -18.74273 -17.63894 -16.54748 -15.99537 -15.21060 -15.05411 -14.79172 -14.15498 -13.36101 -13.09174 -12.87087 -12.43791 -12.09657 -11.96533 -11.69691 -11.42518 -11.11639 -10.89626 -10.42158 -10.25383 -9.73921 -9.40150 -7.95005 -7.62824 -7.18543 -4.77012 1.75416 2.30366 2.85133 2.91065 2.96208 3.39832 3.65668 3.71632 4.28870 4.69649 4.97856 5.18079 5.50952 6.18372 6.40280 6.50603 6.76959 6.85992 7.01476 7.26792 7.50021 7.64512 8.03329 8.17766 8.30598 8.40399 8.53345 9.75974 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.011185 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.651702 B = 2502.785129 C = 3230.226211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C -0.015 4.015 4 C -0.108 4.108 5 C 0.120 3.880 6 C -0.437 4.437 7 H 0.092 0.908 8 C 0.072 3.928 9 N -0.776 5.776 10 Si 0.917 3.083 11 H -0.256 1.256 12 H -0.268 1.268 13 H -0.271 1.271 14 C -0.233 4.233 15 C 0.113 3.887 16 F -0.154 7.154 17 C -0.039 4.039 18 O -0.488 6.488 19 H 0.137 0.863 20 H 0.290 0.710 21 H 0.117 0.883 22 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 2.242 2.011 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.027 4.027 3 C -0.020 4.020 4 C -0.130 4.130 5 C 0.116 3.884 6 C -0.464 4.464 7 H 0.110 0.890 8 C -0.149 4.149 9 N -0.399 5.399 10 Si 0.741 3.259 11 H -0.179 1.179 12 H -0.193 1.193 13 H -0.196 1.196 14 C -0.254 4.254 15 C 0.093 3.907 16 F -0.133 7.133 17 C -0.087 4.087 18 O -0.294 6.294 19 H 0.154 0.846 20 H 0.101 0.899 21 H 0.135 0.865 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.180 1.546 1.622 2.532 hybrid contribution 0.762 0.074 0.695 1.034 sum 1.942 1.620 2.317 3.430 Atomic orbital electron populations 1.81058 1.12403 1.10148 1.10137 1.25808 0.92792 0.92196 0.91904 1.16075 0.83462 1.02922 0.99515 1.21498 0.94342 0.98940 0.98266 1.17271 0.90992 0.90120 0.89972 1.19708 1.01431 1.05538 1.19753 0.89043 1.26076 0.94235 0.96612 0.97977 1.69801 1.17458 1.17411 1.35270 0.86086 0.80258 0.79198 0.80396 1.17941 1.19307 1.19581 1.20763 0.99428 1.05655 0.99579 1.17306 0.88639 0.94117 0.90630 1.91375 1.80563 1.73871 1.67505 1.17591 0.87594 1.03762 0.99782 1.84843 1.76359 1.27194 1.41034 0.84555 0.89882 0.86455 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.21 18.54 41.84 0.78 -9.43 14 2 C 0.29 6.25 14.86 -22.48 -0.33 5.91 14 3 C -0.02 -0.34 5.74 -106.78 -0.61 -0.95 14 4 C -0.11 -2.47 8.39 -38.42 -0.32 -2.79 14 5 C 0.12 2.75 5.57 -106.87 -0.60 2.16 14 6 C -0.44 -9.84 9.03 -37.82 -0.34 -10.18 14 7 H 0.09 1.94 7.91 -52.49 -0.41 1.52 14 8 C 0.07 1.56 5.13 -17.34 -0.09 1.47 14 9 N -0.78 -17.65 10.97 55.54 0.61 -17.04 14 10 Si 0.92 16.20 29.59 -169.99 -5.03 11.17 14 11 H -0.26 -4.45 7.11 56.52 0.40 -4.05 14 12 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 13 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 14 C -0.23 -5.05 9.68 -39.19 -0.38 -5.43 14 15 C 0.11 2.43 7.25 -39.77 -0.29 2.14 14 16 F -0.15 -3.20 17.09 2.25 0.04 -3.16 14 17 C -0.04 -0.83 6.74 -38.26 -0.26 -1.09 14 18 O -0.49 -9.68 12.76 -18.33 -0.23 -9.91 14 19 H 0.14 3.20 6.17 -52.49 -0.32 2.87 14 20 H 0.29 5.97 8.30 -40.82 -0.34 5.63 14 21 H 0.12 2.35 8.06 -52.48 -0.42 1.93 14 22 H 0.36 5.48 9.06 45.56 0.41 5.89 14 LS Contribution 222.15 15.07 3.35 3.35 Total: -1.00 -25.10 222.15 -3.60 -28.69 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.12 Total: 5.10 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.22 Total: -8.77 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 1.38 Total: -26.47 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.23 Total: -9.91 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.10 -3.60 -28.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258070540.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.907 kcal (2) G-P(sol) polarization free energy of solvation -25.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds