Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39081 * 120.12970 * 310.80441 * 3 2 1 5 5 C 1.40497 * 119.56826 * 179.73444 * 4 3 2 6 6 C 1.41274 * 120.08450 * 180.29475 * 5 4 3 7 7 H 1.07997 * 119.99970 * 204.81887 * 6 5 4 8 8 C 1.39862 * 120.00072 * 24.80744 * 6 5 4 9 9 N 1.30898 * 119.99830 * 17.83877 * 8 6 5 10 10 Si 1.86796 * 120.00267 * 197.83439 * 8 6 5 11 11 H 1.48497 * 109.47162 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47244 * 120.00395 * 10 8 6 13 13 H 1.48501 * 109.47344 * 240.00487 * 10 8 6 14 14 C 1.40939 * 119.83147 * 0.56613 * 5 4 3 15 15 C 1.36502 * 120.25720 * 359.70156 * 14 5 4 16 16 F 1.35099 * 119.78322 * 180.02562 * 15 14 5 17 17 C 1.39420 * 120.43428 * 0.02562 * 15 14 5 18 18 O 1.35544 * 119.91730 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.21621 * 0.02617 * 4 3 2 20 20 H 0.97002 * 119.99727 * 179.97438 * 9 8 6 21 21 H 1.08006 * 119.87492 * 179.73402 * 14 5 4 22 22 H 0.96699 * 114.00047 * 269.97871 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2664 -0.7851 0.9105 5 6 4.6713 -0.7798 0.8964 6 6 5.3918 -1.5785 1.8123 7 1 6.3988 -1.3056 2.0910 8 6 4.8008 -2.7226 2.3581 9 7 3.7496 -3.2527 1.7859 10 14 5.5114 -3.4941 3.9038 11 1 6.6901 -2.7097 4.3516 12 1 4.4824 -3.4955 4.9745 13 1 5.9265 -4.8903 3.6143 14 6 5.3601 0.0288 -0.0300 15 6 4.6675 0.8015 -0.9168 16 9 5.3375 1.5726 -1.8010 17 6 3.2733 0.8003 -0.9162 18 8 2.5962 1.5712 -1.8019 19 1 2.7324 -1.3990 1.6206 20 1 3.3400 -4.0464 2.1643 21 1 6.4401 0.0367 -0.0386 22 1 2.3991 2.4610 -1.4786 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258070540.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = -66.306037 kcal Electronic energy + Delta-G solvation = -12505.947325 eV Core-core repulsion = 9939.681528 eV Total energy + Delta-G solvation = -2566.265797 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.65192 -40.20744 -37.77572 -37.39814 -35.24036 -31.98051 -30.80792 -27.04740 -24.63224 -23.13674 -20.43549 -19.27395 -18.26027 -17.66879 -16.81940 -16.72054 -16.47083 -15.79501 -14.94894 -14.76335 -14.59471 -14.17389 -13.75628 -13.61447 -13.36688 -12.90790 -12.77529 -12.44835 -12.07971 -11.79396 -11.37664 -11.03484 -9.67086 -9.34172 -8.81348 -6.48691 0.03450 0.60452 1.43194 1.47948 1.62007 1.64652 2.01840 2.20057 2.61372 2.95615 3.35409 3.48497 3.82018 4.49081 4.69114 4.80045 5.10892 5.19452 5.33409 5.53614 5.79891 5.95434 6.32963 6.47384 6.62636 6.71564 6.99410 8.16009 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.011185 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.651702 B = 2502.785129 C = 3230.226211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.293 3.707 3 C -0.018 4.018 4 C -0.120 4.120 5 C 0.100 3.900 6 C -0.459 4.459 7 H 0.100 0.900 8 C 0.038 3.962 9 N -0.809 5.809 10 Si 0.987 3.013 11 H -0.250 1.250 12 H -0.267 1.267 13 H -0.268 1.268 14 C -0.232 4.232 15 C 0.108 3.892 16 F -0.149 7.149 17 C -0.032 4.032 18 O -0.495 6.495 19 H 0.126 0.874 20 H 0.297 0.703 21 H 0.131 0.869 22 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 2.320 2.435 4.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.020 4.020 3 C -0.022 4.022 4 C -0.142 4.142 5 C 0.097 3.903 6 C -0.486 4.486 7 H 0.118 0.882 8 C -0.180 4.180 9 N -0.433 5.433 10 Si 0.807 3.193 11 H -0.173 1.173 12 H -0.192 1.192 13 H -0.193 1.193 14 C -0.253 4.253 15 C 0.088 3.912 16 F -0.128 7.128 17 C -0.081 4.081 18 O -0.305 6.305 19 H 0.143 0.857 20 H 0.108 0.892 21 H 0.149 0.851 22 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.751 1.652 2.034 3.151 hybrid contribution 0.555 0.114 0.481 0.743 sum 2.306 1.766 2.515 3.842 Atomic orbital electron populations 1.81057 1.12516 1.10435 1.10438 1.25766 0.92694 0.91948 0.91641 1.16073 0.83434 1.03029 0.99658 1.21416 0.94546 0.99511 0.98740 1.17519 0.91230 0.90852 0.90692 1.20008 1.02092 1.06118 1.20403 0.88193 1.26868 0.94256 0.96642 1.00270 1.69839 1.18627 1.18122 1.36668 0.85055 0.79558 0.78213 0.76483 1.17279 1.19151 1.19308 1.20920 1.00193 1.05075 0.99116 1.17330 0.88739 0.94315 0.90817 1.91385 1.80437 1.73685 1.67291 1.17609 0.87714 1.03623 0.99167 1.84760 1.76085 1.28673 1.40955 0.85656 0.89200 0.85074 0.75832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.28 18.54 19.00 0.35 -19.92 14 2 C 0.29 12.54 14.86 88.33 1.31 13.86 14 3 C -0.02 -0.76 5.74 -21.26 -0.12 -0.88 14 4 C -0.12 -5.47 8.39 23.02 0.19 -5.28 14 5 C 0.10 4.58 5.57 -21.32 -0.12 4.46 14 6 C -0.46 -20.42 9.03 23.41 0.21 -20.21 14 7 H 0.10 4.14 7.91 -2.91 -0.02 4.11 14 8 C 0.04 1.61 5.13 85.23 0.44 2.05 14 9 N -0.81 -36.70 10.97 21.81 0.24 -36.46 14 10 Si 0.99 32.25 29.59 68.60 2.03 34.28 14 11 H -0.25 -7.84 7.11 99.48 0.71 -7.13 14 12 H -0.27 -8.60 7.11 99.48 0.71 -7.89 14 13 H -0.27 -8.61 7.11 99.48 0.71 -7.90 14 14 C -0.23 -9.84 9.68 22.53 0.22 -9.62 14 15 C 0.11 4.49 7.25 22.15 0.16 4.65 14 16 F -0.15 -5.92 17.09 44.97 0.77 -5.15 14 17 C -0.03 -1.35 6.74 23.13 0.16 -1.19 14 18 O -0.50 -18.66 12.76 -88.49 -1.13 -19.79 14 19 H 0.13 5.97 6.17 -2.91 -0.02 5.95 14 20 H 0.30 12.17 8.30 -92.71 -0.77 11.40 14 21 H 0.13 5.08 8.06 -2.91 -0.02 5.05 14 22 H 0.39 10.77 9.06 -74.06 -0.67 10.10 14 Total: -1.00 -50.84 222.15 5.32 -45.52 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.62 Total: 13.69 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 2.45 Total: -12.17 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.59 Total: -56.38 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.13 Total: -19.79 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.77 Total: -5.15 kcal Atomic # 14 Polarization: 32.25 SS G_CDS: 2.03 Total: 34.28 kcal Total: -50.84 5.32 -45.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258070540.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.789 kcal (2) G-P(sol) polarization free energy of solvation -50.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds