Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31874 * 118.94128 * 2 1 4 4 C 1.32139 * 120.97110 * 180.02562 * 3 2 1 5 5 C 1.40016 * 118.91405 * 0.25489 * 4 3 2 6 6 C 1.47717 * 120.94307 * 179.74774 * 5 4 3 7 7 O 1.21591 * 120.00173 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.36877 * 120.00050 * 179.97438 * 8 6 5 10 10 H 1.08000 * 119.99786 * 0.02562 * 9 8 6 11 11 C 1.39044 * 120.00053 * 179.97438 * 9 8 6 12 12 N 1.31362 * 120.00154 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99826 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47023 * 90.00625 * 13 11 9 15 15 H 1.48504 * 109.46984 * 210.00289 * 13 11 9 16 16 H 1.48501 * 109.47296 * 330.00331 * 13 11 9 17 17 C 1.40024 * 118.11018 * 359.48634 * 5 4 3 18 18 N 1.31876 * 118.93995 * 179.97438 * 2 1 3 19 19 H 1.09005 * 109.47477 * 90.00244 * 1 2 3 20 20 H 1.09004 * 109.47115 * 209.99864 * 1 2 3 21 21 H 1.09005 * 109.47248 * 329.99831 * 1 2 3 22 22 H 1.08002 * 120.53857 * 179.97438 * 4 3 2 23 23 H 0.96999 * 120.00370 * 0.02562 * 8 6 5 24 24 H 0.97006 * 120.00059 * 179.97438 * 12 11 9 25 25 H 1.07993 * 120.54336 * 180.26224 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1452 1.1541 0.0000 4 6 3.4657 1.2009 -0.0005 5 6 4.1857 0.0000 -0.0065 6 6 5.6628 0.0000 -0.0129 7 8 6.2708 1.0530 -0.0125 8 7 6.3367 -1.1672 -0.0181 9 6 7.7054 -1.1672 -0.0245 10 1 8.2454 -0.2319 -0.0250 11 6 8.4006 -2.3714 -0.0293 12 7 7.7438 -3.5090 -0.0282 13 14 10.2686 -2.3713 -0.0374 14 1 10.7696 -2.3736 1.3605 15 1 10.7606 -3.5828 -0.7415 16 1 10.7606 -1.1578 -0.7377 17 6 3.4657 -1.2009 -0.0006 18 7 2.1451 -1.1541 0.0005 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5139 22 1 3.9812 2.1499 -0.0009 23 1 5.8517 -2.0072 -0.0180 24 1 8.2288 -4.3491 -0.0320 25 1 3.9812 -2.1499 -0.0007 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259547731.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 3.209896 kcal Electronic energy + Delta-G solvation = -12653.427979 eV Core-core repulsion = 10245.929675 eV Total energy + Delta-G solvation = -2407.498304 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.70223 -38.08979 -34.33193 -33.40948 -32.82543 -31.42665 -28.58946 -25.32897 -24.05985 -22.94012 -19.89937 -18.41608 -17.36328 -16.53938 -15.87729 -15.00478 -14.85563 -14.05545 -13.56234 -13.50946 -13.09067 -12.83950 -12.38061 -12.29374 -11.80005 -11.25951 -11.08658 -10.56368 -10.52501 -10.45437 -9.80175 -9.00666 -8.96024 -8.67096 -8.25839 -6.72671 -4.03523 0.90344 1.39652 3.05529 3.13947 3.19482 3.62946 3.95520 4.18729 4.31575 4.39311 4.71147 4.95853 5.11838 5.34657 5.47541 5.59293 5.60258 5.94871 6.00582 6.27748 6.69408 7.24718 7.27775 7.77737 8.30691 8.35298 8.88626 9.21479 9.77499 10.43305 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.070472 B = 0.007375 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.228279 B = 3795.451429 C = 4177.528742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.295 3.705 3 N -0.522 5.522 4 C 0.185 3.815 5 C -0.201 4.201 6 C 0.468 3.532 7 O -0.594 6.594 8 N -0.535 5.535 9 C -0.293 4.293 10 H 0.112 0.888 11 C 0.025 3.975 12 N -0.882 5.882 13 Si 0.938 3.062 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.157 3.843 18 N -0.519 5.519 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.177 0.823 23 H 0.393 0.607 24 H 0.279 0.721 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 1.427 0.030 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.028 3.972 3 N -0.236 5.236 4 C 0.016 3.984 5 C -0.209 4.209 6 C 0.255 3.745 7 O -0.481 6.481 8 N -0.167 5.167 9 C -0.422 4.422 10 H 0.130 0.870 11 C -0.180 4.180 12 N -0.520 5.520 13 Si 0.764 3.236 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.010 4.010 18 N -0.233 5.233 19 H 0.100 0.900 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.194 0.806 23 H 0.228 0.772 24 H 0.089 0.911 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.912 1.877 0.027 9.107 hybrid contribution 1.647 -0.717 -0.015 1.797 sum -7.264 1.160 0.012 7.356 Atomic orbital electron populations 1.20493 0.86115 1.03740 1.03468 1.23240 0.98068 0.83874 0.91999 1.68257 1.10089 1.30070 1.15193 1.23340 0.88404 0.98622 0.87984 1.22115 0.97813 0.96032 1.04921 1.17250 0.84823 0.85120 0.87309 1.90617 1.68642 1.30822 1.58067 1.41914 1.07539 1.06776 1.60517 1.19919 0.80873 0.94972 1.46445 0.87046 1.25462 1.01679 0.94444 0.96391 1.69581 1.37482 0.97986 1.46981 0.85719 0.80873 0.78254 0.78758 1.19970 1.20555 1.18994 1.23482 0.89325 0.98326 0.89891 1.68166 1.10093 1.30164 1.14855 0.90017 0.89921 0.89949 0.80642 0.77203 0.91075 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.31 36.01 0.37 -0.53 15 2 C 0.30 4.78 7.64 -157.06 -1.20 3.58 15 3 N -0.52 -9.03 10.31 -10.38 -0.11 -9.13 15 4 C 0.18 3.41 10.88 -16.75 -0.18 3.23 15 5 C -0.20 -4.01 5.91 -104.69 -0.62 -4.63 15 6 C 0.47 11.20 7.73 -12.39 -0.10 11.10 15 7 O -0.59 -16.01 16.02 5.29 0.08 -15.92 15 8 N -0.53 -13.17 5.24 -11.87 -0.06 -13.24 15 9 C -0.29 -7.76 9.68 -15.00 -0.15 -7.91 15 10 H 0.11 3.08 7.15 -52.49 -0.38 2.70 15 11 C 0.02 0.63 5.50 -17.45 -0.10 0.53 15 12 N -0.88 -22.48 13.05 55.50 0.72 -21.75 15 13 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 15 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 15 H -0.28 -5.77 7.11 56.52 0.40 -5.36 15 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 17 C 0.16 2.86 10.81 -16.75 -0.18 2.68 15 18 N -0.52 -9.00 10.31 -10.38 -0.11 -9.10 15 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.18 3.07 7.75 -52.49 -0.41 2.66 15 23 H 0.39 9.10 6.03 -40.82 -0.25 8.86 15 24 H 0.28 6.67 8.31 -40.82 -0.34 6.34 15 25 H 0.17 2.85 6.54 -52.49 -0.34 2.50 15 LS Contribution 234.47 15.07 3.53 3.53 Total: -1.00 -29.57 234.47 -4.88 -34.45 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -1.77 Total: 8.40 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.15 Total: 8.04 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.45 Total: -53.22 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.92 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.57 -4.88 -34.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259547731.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds