Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34482 * 125.77981 * 2 1 4 4 N 1.37947 * 106.89553 * 180.02562 * 3 2 1 5 5 C 1.37480 * 144.16212 * 179.97438 * 4 3 2 6 6 O 1.35276 * 126.08205 * 0.02562 * 5 4 3 7 7 C 1.39054 * 107.84087 * 180.02562 * 5 4 3 8 8 C 1.39971 * 126.36881 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00428 * 352.48588 * 8 7 5 10 10 C 1.39772 * 119.99673 * 172.48964 * 8 7 5 11 11 N 1.31112 * 120.00390 * 6.04573 * 10 8 7 12 12 Si 1.86805 * 119.99760 * 186.04996 * 10 8 7 13 13 H 1.48498 * 109.47048 * 94.96636 * 12 10 8 14 14 H 1.48494 * 109.47169 * 214.96926 * 12 10 8 15 15 H 1.48503 * 109.47028 * 334.97146 * 12 10 8 16 16 N 1.39284 * 107.26127 * 0.02562 * 7 5 4 17 17 H 0.96997 * 126.13093 * 180.02562 * 16 7 5 18 18 C 1.36327 * 107.06186 * 0.02562 * 4 3 2 19 19 N 1.31657 * 108.20158 * 359.72884 * 18 4 3 20 20 H 1.09001 * 109.47636 * 89.99714 * 1 2 3 21 21 H 1.09001 * 109.47042 * 210.00237 * 1 2 3 22 22 H 1.09007 * 109.46899 * 329.99982 * 1 2 3 23 23 H 1.08000 * 126.55066 * 359.97438 * 3 2 1 24 24 H 0.96702 * 114.00553 * 89.99505 * 6 5 4 25 25 H 0.96996 * 120.00057 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0910 0.0000 4 7 3.5984 0.6445 -0.0006 5 6 4.9135 1.0454 -0.0013 6 8 5.3568 2.3235 -0.0013 7 6 5.7070 -0.0965 -0.0021 8 6 7.1062 -0.1349 -0.0025 9 1 7.6715 0.7772 -0.1245 10 6 7.7718 -1.3539 0.1549 11 7 7.0907 -2.4738 0.1839 12 14 9.6318 -1.3873 0.3240 13 1 9.9978 -1.4058 1.7631 14 1 10.1673 -2.6035 -0.3386 15 1 10.2090 -0.1790 -0.3180 16 7 4.8505 -1.1949 -0.0025 17 1 5.1167 -2.1277 -0.0027 18 6 3.5551 -0.7180 -0.0015 19 7 2.2920 -1.0893 0.0044 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.9654 2.1201 -0.0004 24 1 5.4862 2.6950 0.8821 25 1 7.5526 -3.3197 0.2935 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590389.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = 31.154987 kcal Electronic energy + Delta-G solvation = -13145.926490 eV Core-core repulsion = 10739.639976 eV Total energy + Delta-G solvation = -2406.286514 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.55916 -39.23240 -37.52479 -35.55259 -33.30562 -31.66231 -30.08867 -28.01238 -25.68879 -22.47678 -21.76626 -21.49405 -19.27125 -18.82591 -17.33577 -17.19708 -16.57120 -16.35941 -15.27379 -14.96076 -14.35838 -13.98556 -13.86751 -13.48775 -13.25027 -13.04872 -12.82856 -12.38904 -12.10273 -11.74396 -11.50612 -11.17565 -10.76760 -9.18375 -9.07184 -8.29474 -6.63855 0.97623 1.40826 1.53345 1.58884 1.74461 1.99990 2.11726 2.30117 2.38965 2.97272 3.73116 4.03477 4.38940 4.65799 4.79337 4.97803 4.99597 5.05093 5.20845 5.31417 5.66621 5.70012 6.10774 6.28736 6.49354 6.77155 6.87511 7.28128 7.56752 8.01246 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.059842 B = 0.009538 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.788304 B = 2935.062585 C = 3381.980245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.015 3.985 3 C -0.136 4.136 4 N -0.375 5.375 5 C -0.119 4.119 6 O -0.441 6.441 7 C 0.278 3.722 8 C -0.448 4.448 9 H 0.115 0.885 10 C 0.036 3.964 11 N -0.841 5.841 12 Si 1.020 2.980 13 H -0.258 1.258 14 H -0.264 1.264 15 H -0.253 1.253 16 N -0.577 5.577 17 H 0.439 0.561 18 C 0.328 3.672 19 N -0.554 5.554 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.183 0.817 24 H 0.355 0.645 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 2.122 1.740 2.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.269 4.269 4 N -0.059 5.059 5 C -0.264 4.264 6 O -0.240 6.240 7 C 0.166 3.834 8 C -0.480 4.480 9 H 0.133 0.867 10 C -0.179 4.179 11 N -0.469 5.469 12 Si 0.839 3.161 13 H -0.183 1.183 14 H -0.188 1.188 15 H -0.176 1.176 16 N -0.211 5.211 17 H 0.290 0.710 18 C -0.020 4.020 19 N -0.286 5.286 20 H 0.095 0.905 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.200 0.800 24 H 0.207 0.793 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.174 1.210 1.130 1.665 hybrid contribution 0.929 0.451 0.615 1.202 sum 0.756 1.661 1.746 2.525 Atomic orbital electron populations 1.20027 0.84223 1.03404 1.02922 1.21190 0.97747 0.86650 1.06222 1.22140 0.79803 1.00953 1.23990 1.43741 1.05724 1.09030 1.47389 1.17289 0.78592 0.85520 1.44990 1.84897 1.84352 1.22704 1.32073 1.18121 0.90877 0.81233 0.93129 1.19192 0.87593 0.97055 1.44208 0.86699 1.27166 1.08193 0.92996 0.89578 1.68954 1.41574 1.00707 1.35712 0.84576 0.72191 0.79629 0.79746 1.18268 1.18780 1.17585 1.42375 0.98389 1.10361 1.69943 0.71002 1.20921 0.89145 0.80871 1.11077 1.69991 0.95520 1.30903 1.32204 0.90490 0.91334 0.88974 0.79979 0.79294 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.44 10.42 71.23 0.74 -0.70 15 2 C 0.01 0.64 7.07 41.32 0.29 0.94 15 3 C -0.14 -6.19 11.95 82.87 0.99 -5.20 15 4 N -0.37 -19.77 3.46 -463.03 -1.60 -21.37 15 5 C -0.12 -6.34 8.45 84.00 0.71 -5.63 15 6 O -0.44 -20.66 13.58 -85.61 -1.16 -21.82 15 7 C 0.28 14.88 6.71 38.57 0.26 15.14 15 8 C -0.45 -21.95 9.28 23.06 0.21 -21.73 15 9 H 0.12 5.33 7.85 -2.91 -0.02 5.31 15 10 C 0.04 1.58 5.49 85.17 0.47 2.05 15 11 N -0.84 -38.18 10.75 21.81 0.23 -37.94 15 12 Si 1.02 32.86 29.57 68.60 2.03 34.89 15 13 H -0.26 -8.03 7.11 99.48 0.71 -7.32 15 14 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 15 H -0.25 -7.95 7.11 99.48 0.71 -7.24 15 16 N -0.58 -30.98 5.92 -188.37 -1.11 -32.09 15 17 H 0.44 22.89 6.38 -92.71 -0.59 22.30 15 18 C 0.33 17.87 9.59 260.25 2.49 20.37 15 19 N -0.55 -28.48 11.29 -185.82 -2.10 -30.58 15 20 H 0.08 2.05 8.14 -2.39 -0.02 2.04 15 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.09 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.18 6.88 8.06 -2.91 -0.02 6.86 15 24 H 0.35 13.27 9.06 -74.06 -0.67 12.60 15 25 H 0.31 12.35 8.30 -92.71 -0.77 11.58 15 Total: -1.00 -63.24 228.91 2.44 -60.80 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.02 Total: 42.88 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.17 Total: 5.23 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -4.58 Total: -121.99 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.16 Total: -21.82 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 2.03 Total: 34.89 kcal Total: -63.24 2.44 -60.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590389.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.957 kcal (2) G-P(sol) polarization free energy of solvation -63.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds