Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48491 * 109.47639 * 274.99437 * 3 2 1 5 5 H 1.48506 * 109.47354 * 34.99755 * 3 2 1 6 6 H 1.48501 * 109.46917 * 154.99005 * 3 2 1 7 7 C 1.37872 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 189.63994 * 7 2 1 9 9 C 1.50705 * 120.00098 * 9.64341 * 7 2 1 10 10 H 1.09001 * 109.17787 * 304.78715 * 9 7 2 11 11 C 1.53234 * 109.18229 * 185.48052 * 9 7 2 12 12 C 1.50325 * 109.20845 * 187.20223 * 11 9 7 13 13 O 1.32224 * 131.62159 * 200.33554 * 12 11 9 14 14 N 1.21391 * 113.02690 * 179.50005 * 13 12 11 15 15 C 1.30744 * 112.74955 * 0.59579 * 14 13 12 16 16 C 1.39213 * 122.67579 * 20.28238 * 12 11 9 17 17 C 1.46172 * 122.32744 * 0.36065 * 16 12 11 18 18 O 1.21323 * 122.54319 * 191.19555 * 17 16 12 19 19 C 1.52368 * 114.90692 * 11.20231 * 17 16 12 20 20 H 0.96996 * 119.99610 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.51678 * 67.28562 * 11 9 7 22 22 H 1.08993 * 109.56057 * 307.14836 * 11 9 7 23 23 H 1.08000 * 127.63764 * 179.80333 * 15 14 13 24 24 H 1.09000 * 109.67739 * 198.02307 * 19 17 16 25 25 H 1.09003 * 109.67851 * 77.48363 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3946 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0732 -1.2007 0.1561 9 6 1.2671 -2.4898 -0.2197 10 1 0.4641 -2.5731 0.5126 11 6 2.2394 -3.6599 -0.0364 12 6 1.5529 -4.9392 -0.4259 13 8 1.8131 -6.2012 -0.1291 14 7 1.0230 -6.9781 -0.6248 15 6 0.1099 -6.3803 -1.3447 16 6 0.4251 -4.9688 -1.2416 17 6 -0.1753 -3.7540 -1.7896 18 8 -1.2607 -3.7496 -2.3316 19 6 0.6657 -2.4936 -1.6287 20 1 -0.4849 0.8400 0.0004 21 1 2.5489 -3.7160 1.0073 22 1 3.1147 -3.5094 -0.6682 23 1 -0.7021 -6.8366 -1.8914 24 1 0.0369 -1.6133 -1.7617 25 1 1.4657 -2.4891 -2.3692 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259619477.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 11.169307 kcal Electronic energy + Delta-G solvation = -13207.517685 eV Core-core repulsion = 10768.071775 eV Total energy + Delta-G solvation = -2439.445909 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.47057 -38.61135 -35.81876 -33.28325 -32.61998 -30.06923 -28.09094 -25.44373 -23.73373 -21.57283 -21.01526 -18.50825 -17.40469 -17.08416 -16.18243 -15.23184 -14.84397 -14.11803 -13.86369 -13.72012 -13.41623 -12.71751 -12.32182 -11.66490 -11.25551 -11.10267 -10.81611 -10.54623 -10.32164 -10.07980 -9.77168 -9.72514 -8.88596 -8.77294 -8.54158 -6.25072 -4.31477 1.37426 2.03788 3.15159 3.20418 3.29647 3.31405 3.39518 4.27813 4.46076 4.75360 4.98788 5.09850 5.33401 5.74052 5.88860 5.97707 6.06109 6.23870 6.36483 6.49230 6.74901 7.35505 7.48265 7.71675 8.03220 8.18448 8.47409 8.71877 9.34842 10.83446 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.051967 B = 0.009848 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.675218 B = 2842.653931 C = 3261.191524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.057 3.943 10 H 0.045 0.955 11 C -0.039 4.039 12 C 0.052 3.948 13 O 0.089 5.911 14 N -0.383 5.383 15 C 0.047 3.953 16 C -0.312 4.312 17 C 0.432 3.568 18 O -0.473 6.473 19 C -0.147 4.147 20 H 0.266 0.734 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.198 0.802 24 H 0.111 0.889 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -5.870 -1.249 7.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.038 3.962 10 H 0.063 0.937 11 C -0.077 4.077 12 C -0.014 4.014 13 O 0.035 5.965 14 N -0.094 5.094 15 C -0.133 4.133 16 C -0.318 4.318 17 C 0.311 3.689 18 O -0.349 6.349 19 C -0.185 4.185 20 H 0.076 0.924 21 H 0.110 0.890 22 H 0.116 0.884 23 H 0.215 0.785 24 H 0.129 0.871 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.238 -7.009 -1.191 7.812 hybrid contribution -0.032 1.402 -0.335 1.442 sum 3.205 -5.607 -1.527 6.636 Atomic orbital electron populations 1.69960 1.06086 1.27399 1.48205 1.25003 0.94827 0.99530 0.94324 0.86510 0.79931 0.83019 0.78210 1.20458 1.21166 1.19634 1.20951 0.94434 0.89746 1.51273 0.91574 1.18755 0.93986 0.91166 0.92295 0.93675 1.20829 0.99662 0.84424 1.02784 1.26240 0.94396 0.87633 0.93175 1.84345 1.42904 1.13696 1.55511 1.74164 1.04536 1.16455 1.14212 1.25746 0.98745 0.90730 0.98086 1.23191 1.02283 0.95968 1.10344 1.22460 0.85294 0.88550 0.72595 1.90455 1.20830 1.88089 1.35572 1.22587 0.99634 0.95148 1.01120 0.92384 0.89036 0.88383 0.78542 0.87105 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.52 12.06 55.43 0.67 -22.85 15 2 C 0.07 1.68 5.15 -17.82 -0.09 1.59 15 3 Si 0.90 19.44 29.55 -169.99 -5.02 14.41 15 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 7 C -0.53 -12.55 8.47 -34.44 -0.29 -12.84 15 8 H 0.07 1.51 7.76 -52.48 -0.41 1.10 15 9 C 0.06 1.24 1.89 -91.55 -0.17 1.06 15 10 H 0.05 1.11 8.09 -51.93 -0.42 0.69 15 11 C -0.04 -0.67 5.45 -27.94 -0.15 -0.83 15 12 C 0.05 0.90 7.60 -34.13 -0.26 0.64 15 13 O 0.09 1.52 11.04 21.43 0.24 1.76 15 14 N -0.38 -6.59 12.04 31.70 0.38 -6.21 15 15 C 0.05 0.79 12.46 -15.34 -0.19 0.60 15 16 C -0.31 -5.88 6.47 -103.67 -0.67 -6.55 15 17 C 0.43 9.12 7.09 -30.30 -0.21 8.90 15 18 O -0.47 -11.01 17.99 5.52 0.10 -10.91 15 19 C -0.15 -3.16 5.30 -26.95 -0.14 -3.30 15 20 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 21 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 22 H 0.10 1.52 8.13 -51.93 -0.42 1.10 15 23 H 0.20 2.68 8.06 -52.49 -0.42 2.26 15 24 H 0.11 2.72 6.69 -51.93 -0.35 2.37 15 25 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 LS Contribution 227.18 15.07 3.42 3.42 Total: -1.00 -27.39 227.18 -4.40 -31.79 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.00 Total: -0.70 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.19 Total: -10.72 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 1.05 Total: -29.05 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.34 Total: -9.15 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -27.39 -4.40 -31.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259619477.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.961 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds