Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48491 * 109.47639 * 274.99437 * 3 2 1 5 5 H 1.48506 * 109.47354 * 34.99755 * 3 2 1 6 6 H 1.48501 * 109.46917 * 154.99005 * 3 2 1 7 7 C 1.37872 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 189.63994 * 7 2 1 9 9 C 1.50705 * 120.00098 * 9.64341 * 7 2 1 10 10 H 1.09001 * 109.17787 * 304.78715 * 9 7 2 11 11 C 1.53234 * 109.18229 * 185.48052 * 9 7 2 12 12 C 1.50325 * 109.20845 * 187.20223 * 11 9 7 13 13 O 1.32224 * 131.62159 * 200.33554 * 12 11 9 14 14 N 1.21391 * 113.02690 * 179.50005 * 13 12 11 15 15 C 1.30744 * 112.74955 * 0.59579 * 14 13 12 16 16 C 1.39213 * 122.67579 * 20.28238 * 12 11 9 17 17 C 1.46172 * 122.32744 * 0.36065 * 16 12 11 18 18 O 1.21323 * 122.54319 * 191.19555 * 17 16 12 19 19 C 1.52368 * 114.90692 * 11.20231 * 17 16 12 20 20 H 0.96996 * 119.99610 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.51678 * 67.28562 * 11 9 7 22 22 H 1.08993 * 109.56057 * 307.14836 * 11 9 7 23 23 H 1.08000 * 127.63764 * 179.80333 * 15 14 13 24 24 H 1.09000 * 109.67739 * 198.02307 * 19 17 16 25 25 H 1.09003 * 109.67851 * 77.48363 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3946 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0732 -1.2007 0.1561 9 6 1.2671 -2.4898 -0.2197 10 1 0.4641 -2.5731 0.5126 11 6 2.2394 -3.6599 -0.0364 12 6 1.5529 -4.9392 -0.4259 13 8 1.8131 -6.2012 -0.1291 14 7 1.0230 -6.9781 -0.6248 15 6 0.1099 -6.3803 -1.3447 16 6 0.4251 -4.9688 -1.2416 17 6 -0.1753 -3.7540 -1.7896 18 8 -1.2607 -3.7496 -2.3316 19 6 0.6657 -2.4936 -1.6287 20 1 -0.4849 0.8400 0.0004 21 1 2.5489 -3.7160 1.0073 22 1 3.1147 -3.5094 -0.6682 23 1 -0.7021 -6.8366 -1.8914 24 1 0.0369 -1.6133 -1.7617 25 1 1.4657 -2.4891 -2.3692 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259619477.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = -4.756413 kcal Electronic energy + Delta-G solvation = -13208.208276 eV Core-core repulsion = 10768.071775 eV Total energy + Delta-G solvation = -2440.136500 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.85521 -40.30061 -37.48964 -34.76377 -34.29698 -31.69558 -29.69512 -27.20237 -25.23900 -23.10004 -22.60418 -20.07307 -18.91163 -18.59710 -17.87684 -16.80378 -16.63096 -15.79560 -15.50688 -15.17277 -15.01367 -14.40547 -13.87213 -13.27937 -12.84144 -12.77300 -12.50132 -12.30329 -11.96713 -11.49946 -11.48495 -11.43948 -10.57860 -10.48342 -10.22517 -8.15447 -6.26201 -0.12082 0.66194 1.49233 1.52301 1.60838 1.74340 1.81492 2.47867 3.06016 3.17305 3.30806 3.58096 3.90729 4.25480 4.37773 4.43332 4.61393 4.80240 4.82864 4.93029 5.12442 5.56699 5.69866 5.84992 6.18671 6.52296 6.86238 7.09907 7.43847 8.93368 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.051967 B = 0.009848 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.675218 B = 2842.653931 C = 3261.191524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.056 3.944 10 H 0.008 0.992 11 C -0.031 4.031 12 C 0.072 3.928 13 O 0.096 5.904 14 N -0.387 5.387 15 C 0.060 3.940 16 C -0.340 4.340 17 C 0.436 3.564 18 O -0.504 6.504 19 C -0.143 4.143 20 H 0.262 0.738 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.225 0.775 24 H 0.074 0.926 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -6.713 -1.156 8.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.181 1.181 7 C -0.565 4.565 8 H 0.099 0.901 9 C 0.037 3.963 10 H 0.026 0.974 11 C -0.068 4.068 12 C 0.005 3.995 13 O 0.043 5.957 14 N -0.098 5.098 15 C -0.121 4.121 16 C -0.345 4.345 17 C 0.317 3.683 18 O -0.383 6.383 19 C -0.181 4.181 20 H 0.071 0.929 21 H 0.130 0.870 22 H 0.144 0.856 23 H 0.242 0.758 24 H 0.093 0.907 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.076 -7.865 -1.085 9.423 hybrid contribution -0.585 1.622 -0.342 1.758 sum 4.490 -6.242 -1.427 7.821 Atomic orbital electron populations 1.70105 1.07737 1.27732 1.50260 1.25777 0.95333 1.02839 0.94441 0.85561 0.79139 0.79187 0.77908 1.20436 1.22072 1.18125 1.21395 0.95197 0.90394 1.49547 0.90062 1.18646 0.93760 0.92670 0.91180 0.97396 1.20705 0.98949 0.82422 1.04752 1.26170 0.93444 0.88009 0.91863 1.84365 1.42813 1.13173 1.55316 1.74173 1.04757 1.16370 1.14529 1.26159 0.98908 0.89638 0.97355 1.23015 1.03440 0.96138 1.11916 1.22447 0.84647 0.89359 0.71853 1.90438 1.21957 1.88583 1.37348 1.22458 0.99733 0.94225 1.01730 0.92885 0.87004 0.85555 0.75825 0.90704 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 12.06 21.45 0.26 -50.12 15 2 C 0.02 0.80 5.15 84.65 0.44 1.23 15 3 Si 0.96 39.52 29.55 68.60 2.03 41.55 15 4 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 7 C -0.53 -24.52 8.47 25.60 0.22 -24.31 15 8 H 0.08 3.47 7.76 -2.91 -0.02 3.45 15 9 C 0.06 2.41 1.89 -11.40 -0.02 2.39 15 10 H 0.01 0.39 8.09 -2.39 -0.02 0.37 15 11 C -0.03 -0.98 5.45 29.81 0.16 -0.81 15 12 C 0.07 2.31 7.60 25.80 0.20 2.51 15 13 O 0.10 2.96 11.04 86.72 0.96 3.92 15 14 N -0.39 -12.22 12.04 -53.71 -0.65 -12.87 15 15 C 0.06 1.85 12.46 86.59 1.08 2.93 15 16 C -0.34 -12.23 6.47 -19.25 -0.12 -12.35 15 17 C 0.44 18.35 7.09 28.28 0.20 18.55 15 18 O -0.50 -23.79 17.99 -3.16 -0.06 -23.85 15 19 C -0.14 -6.17 5.30 30.45 0.16 -6.01 15 20 H 0.26 13.87 8.31 -92.71 -0.77 13.10 15 21 H 0.11 3.15 8.14 -2.39 -0.02 3.13 15 22 H 0.13 3.38 8.13 -2.39 -0.02 3.36 15 23 H 0.23 5.47 8.06 -2.91 -0.02 5.45 15 24 H 0.07 3.79 6.69 -2.39 -0.02 3.78 15 25 H 0.10 3.89 8.14 -2.39 -0.02 3.87 15 Total: -1.00 -58.50 227.18 6.06 -52.45 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.21 Total: 4.79 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 2.31 Total: -15.86 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.39 Total: -62.99 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.90 Total: -19.93 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -58.50 6.06 -52.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259619477.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.692 kcal (2) G-P(sol) polarization free energy of solvation -58.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds