Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40990 * 121.06221 * 228.74657 * 3 2 1 5 5 O 1.35323 * 120.51845 * 0.02562 * 4 3 2 6 6 N 1.32493 * 118.95493 * 179.97438 * 4 3 2 7 7 C 1.32663 * 121.33435 * 359.97438 * 6 4 3 8 8 O 1.35355 * 118.79342 * 180.02562 * 7 6 4 9 9 N 1.31879 * 122.41018 * 0.28496 * 7 6 4 10 10 C 1.34055 * 120.84767 * 359.44017 * 9 7 6 11 11 C 1.41034 * 120.70619 * 180.27051 * 10 9 7 12 12 H 1.08005 * 119.99651 * 180.26812 * 11 10 9 13 13 C 1.40305 * 120.00468 * 0.27241 * 11 10 9 14 14 N 1.30577 * 119.99623 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00339 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46972 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47379 * 119.99449 * 15 13 11 18 18 H 1.48500 * 109.46944 * 240.00002 * 15 13 11 19 19 H 0.96698 * 114.00337 * 269.97749 * 5 4 3 20 20 H 0.96705 * 113.99681 * 90.00491 * 8 7 6 21 21 H 0.97001 * 119.99798 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2951 0.7973 0.9080 5 8 2.6507 1.5814 1.8031 6 7 4.6191 0.7654 0.8717 7 6 5.2672 0.0015 0.0020 8 8 6.6207 0.0081 0.0103 9 7 4.6411 -0.7602 -0.8738 10 6 3.3018 -0.8028 -0.9143 11 6 2.6353 -1.6228 -1.8483 12 1 1.5558 -1.6450 -1.8738 13 6 3.3745 -2.4098 -2.7443 14 7 4.6796 -2.3826 -2.7138 15 14 2.4916 -3.4953 -3.9819 16 1 1.0238 -3.3465 -3.8126 17 1 2.8751 -3.0902 -5.3581 18 1 2.8740 -4.9128 -3.7585 19 1 2.4630 2.4737 1.4811 20 1 7.0136 -0.6539 0.5956 21 1 5.1907 -2.9263 -3.3335 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259661475.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -10.276403 kcal Electronic energy + Delta-G solvation = -12721.456060 eV Core-core repulsion = 10177.539851 eV Total energy + Delta-G solvation = -2543.916208 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.043 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70499 -37.31956 -36.14482 -35.23937 -34.08907 -31.58187 -29.96796 -27.00481 -23.31945 -22.35909 -19.14775 -18.09043 -17.71044 -17.08618 -16.21156 -15.35693 -14.57725 -14.41255 -13.34868 -12.74899 -12.48321 -12.02335 -11.87278 -11.79858 -11.51649 -11.42348 -11.20873 -10.66786 -10.52698 -10.08574 -9.71313 -8.99507 -8.17781 -7.91558 -6.94946 -5.32634 1.65619 2.38510 2.86238 2.91248 2.92985 3.59869 3.71367 3.91753 4.10524 4.29511 4.73360 5.23293 5.33406 5.90001 6.23471 6.56237 6.60002 6.85802 7.56368 7.75401 7.96153 8.15437 8.35207 8.47993 8.71613 9.54868 9.70697 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.014086 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.157448 B = 1987.285916 C = 2915.496032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.311 3.689 3 C -0.286 4.286 4 C 0.432 3.568 5 O -0.487 6.487 6 N -0.646 5.646 7 C 0.520 3.480 8 O -0.471 6.471 9 N -0.510 5.510 10 C 0.302 3.698 11 C -0.371 4.371 12 H 0.099 0.901 13 C 0.060 3.940 14 N -0.676 5.676 15 Si 0.919 3.081 16 H -0.254 1.254 17 H -0.265 1.265 18 H -0.266 1.266 19 H 0.397 0.603 20 H 0.397 0.603 21 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -0.203 -0.212 1.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.001 4.001 3 C -0.302 4.302 4 C 0.243 3.757 5 O -0.294 6.294 6 N -0.390 5.390 7 C 0.212 3.788 8 O -0.273 6.273 9 N -0.241 5.241 10 C 0.177 3.823 11 C -0.402 4.402 12 H 0.117 0.883 13 C -0.171 4.171 14 N -0.295 5.295 15 Si 0.741 3.259 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.190 1.190 19 H 0.255 0.745 20 H 0.254 0.746 21 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.153 -0.339 -0.385 1.262 hybrid contribution -0.482 -0.335 -0.335 0.676 sum 0.671 -0.675 -0.720 1.193 Atomic orbital electron populations 1.81043 1.12202 1.12207 1.11797 1.25064 0.91939 0.91677 0.91402 1.17555 0.85868 1.17346 1.09406 1.18656 0.85798 0.87993 0.83297 1.84595 1.75836 1.27943 1.40989 1.67015 1.08978 1.32504 1.30500 1.20142 0.84871 0.87180 0.86613 1.84583 1.13833 1.60448 1.68403 1.68995 1.09164 1.21877 1.24022 1.18216 0.85981 0.88914 0.89234 1.19998 0.95297 1.15615 1.09290 0.88271 1.26321 0.95054 0.97307 0.98424 1.70006 1.06576 1.25779 1.27093 0.86032 0.81058 0.79359 0.79418 1.17713 1.19007 1.19023 0.74524 0.74605 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.39 18.54 41.84 0.78 -10.62 14 2 C 0.31 7.10 13.70 -22.48 -0.31 6.80 14 3 C -0.29 -6.64 5.86 -105.44 -0.62 -7.26 14 4 C 0.43 9.47 7.85 -16.22 -0.13 9.34 14 5 O -0.49 -9.09 13.08 -17.66 -0.23 -9.32 14 6 N -0.65 -14.75 10.45 -14.52 -0.15 -14.90 14 7 C 0.52 12.05 8.67 -91.33 -0.79 11.26 14 8 O -0.47 -9.41 13.63 -17.76 -0.24 -9.65 14 9 N -0.51 -12.76 8.05 -12.49 -0.10 -12.86 14 10 C 0.30 7.51 6.60 -84.35 -0.56 6.96 14 11 C -0.37 -8.91 8.83 -37.75 -0.33 -9.25 14 12 H 0.10 2.33 6.98 -52.48 -0.37 1.96 14 13 C 0.06 1.34 5.50 -17.31 -0.10 1.25 14 14 N -0.68 -15.65 11.52 55.56 0.64 -15.01 14 15 Si 0.92 16.48 29.56 -169.99 -5.03 11.45 14 16 H -0.25 -4.62 7.11 56.52 0.40 -4.22 14 17 H -0.27 -4.66 7.11 56.52 0.40 -4.25 14 18 H -0.27 -4.64 7.11 56.52 0.40 -4.24 14 19 H 0.40 5.30 9.06 45.56 0.41 5.71 14 20 H 0.40 5.77 9.06 45.56 0.41 6.18 14 21 H 0.29 5.86 8.29 -40.82 -0.34 5.52 14 LS Contribution 216.55 15.07 3.26 3.26 Total: -1.00 -29.30 216.55 -2.58 -31.88 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.33 Total: 6.67 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: -2.83 Total: 19.10 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 1.16 Total: -53.39 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.47 Total: -18.98 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.30 -2.58 -31.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661475.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.600 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds