Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40990 * 121.06221 * 228.74657 * 3 2 1 5 5 O 1.35323 * 120.51845 * 0.02562 * 4 3 2 6 6 N 1.32493 * 118.95493 * 179.97438 * 4 3 2 7 7 C 1.32663 * 121.33435 * 359.97438 * 6 4 3 8 8 O 1.35355 * 118.79342 * 180.02562 * 7 6 4 9 9 N 1.31879 * 122.41018 * 0.28496 * 7 6 4 10 10 C 1.34055 * 120.84767 * 359.44017 * 9 7 6 11 11 C 1.41034 * 120.70619 * 180.27051 * 10 9 7 12 12 H 1.08005 * 119.99651 * 180.26812 * 11 10 9 13 13 C 1.40305 * 120.00468 * 0.27241 * 11 10 9 14 14 N 1.30577 * 119.99623 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00339 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46972 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47379 * 119.99449 * 15 13 11 18 18 H 1.48500 * 109.46944 * 240.00002 * 15 13 11 19 19 H 0.96698 * 114.00337 * 269.97749 * 5 4 3 20 20 H 0.96705 * 113.99681 * 90.00491 * 8 7 6 21 21 H 0.97001 * 119.99798 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2951 0.7973 0.9080 5 8 2.6507 1.5814 1.8031 6 7 4.6191 0.7654 0.8717 7 6 5.2672 0.0015 0.0020 8 8 6.6207 0.0081 0.0103 9 7 4.6411 -0.7602 -0.8738 10 6 3.3018 -0.8028 -0.9143 11 6 2.6353 -1.6228 -1.8483 12 1 1.5558 -1.6450 -1.8738 13 6 3.3745 -2.4098 -2.7443 14 7 4.6796 -2.3826 -2.7138 15 14 2.4916 -3.4953 -3.9819 16 1 1.0238 -3.3465 -3.8126 17 1 2.8751 -3.0902 -5.3581 18 1 2.8740 -4.9128 -3.7585 19 1 2.4630 2.4737 1.4811 20 1 7.0136 -0.6539 0.5956 21 1 5.1907 -2.9263 -3.3335 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661475.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -37.895367 kcal Electronic energy + Delta-G solvation = -12722.653708 eV Core-core repulsion = 10177.539851 eV Total energy + Delta-G solvation = -2545.113857 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.043 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.43845 -38.92935 -37.81483 -37.02008 -35.78319 -33.33735 -31.73266 -28.78288 -25.05854 -24.10112 -20.80562 -19.84291 -19.42508 -18.77196 -17.88980 -17.00527 -16.15409 -16.11230 -14.91114 -14.50144 -14.29686 -13.74637 -13.57452 -13.44984 -13.15383 -12.95565 -12.92148 -12.30831 -11.99704 -11.70938 -11.45583 -10.72936 -9.94951 -9.67638 -8.64157 -7.14065 -0.07948 0.68006 1.39512 1.48796 1.55999 1.91341 2.11993 2.20190 2.42302 2.58019 3.09644 3.44803 3.54156 4.15346 4.58506 4.85395 4.89850 5.27791 5.76896 6.02999 6.40849 6.44116 6.73777 6.81453 6.99222 7.77835 8.06137 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.014086 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.157448 B = 1987.285916 C = 2915.496032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.319 3.681 3 C -0.303 4.303 4 C 0.443 3.557 5 O -0.484 6.484 6 N -0.653 5.653 7 C 0.519 3.481 8 O -0.472 6.472 9 N -0.536 5.536 10 C 0.279 3.721 11 C -0.389 4.389 12 H 0.097 0.903 13 C 0.025 3.975 14 N -0.704 5.704 15 Si 0.991 3.009 16 H -0.259 1.259 17 H -0.256 1.256 18 H -0.255 1.255 19 H 0.422 0.578 20 H 0.420 0.580 21 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -0.537 -0.593 1.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C 0.007 3.993 3 C -0.319 4.319 4 C 0.254 3.746 5 O -0.294 6.294 6 N -0.397 5.397 7 C 0.211 3.789 8 O -0.277 6.277 9 N -0.267 5.267 10 C 0.154 3.846 11 C -0.420 4.420 12 H 0.115 0.885 13 C -0.204 4.204 14 N -0.323 5.323 15 Si 0.810 3.190 16 H -0.183 1.183 17 H -0.180 1.180 18 H -0.179 1.179 19 H 0.284 0.716 20 H 0.281 0.719 21 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.088 -0.648 -0.739 1.466 hybrid contribution -0.395 -0.177 -0.154 0.459 sum 0.693 -0.825 -0.893 1.399 Atomic orbital electron populations 1.81036 1.12275 1.12660 1.12244 1.25004 0.91802 0.91376 0.91084 1.17580 0.85930 1.18140 1.10214 1.18702 0.85636 0.87632 0.82667 1.84537 1.75308 1.29420 1.40164 1.67159 1.09255 1.32671 1.30665 1.20344 0.85813 0.86596 0.86159 1.84528 1.12332 1.61511 1.69316 1.68990 1.09412 1.23188 1.25114 1.18537 0.86429 0.89620 0.89995 1.20272 0.95462 1.16269 1.10009 0.88493 1.27130 0.95608 0.98024 0.99626 1.70022 1.07868 1.26419 1.27994 0.84991 0.79240 0.77742 0.77061 1.18293 1.18029 1.17915 0.71612 0.71922 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.83 18.54 19.00 0.35 -22.48 14 2 C 0.32 14.39 13.70 88.33 1.21 15.60 14 3 C -0.30 -13.98 5.86 -20.39 -0.12 -14.10 14 4 C 0.44 18.98 7.85 85.27 0.67 19.65 14 5 O -0.48 -17.17 13.08 -86.11 -1.13 -18.30 14 6 N -0.65 -29.12 10.45 -425.62 -4.45 -33.56 14 7 C 0.52 23.72 8.67 180.60 1.57 25.29 14 8 O -0.47 -18.32 13.63 -86.45 -1.18 -19.49 14 9 N -0.54 -26.75 8.05 -306.65 -2.47 -29.22 14 10 C 0.28 13.93 6.60 40.45 0.27 14.19 14 11 C -0.39 -18.71 8.83 23.46 0.21 -18.51 14 12 H 0.10 4.56 6.98 -2.91 -0.02 4.54 14 13 C 0.02 1.09 5.50 85.38 0.47 1.56 14 14 N -0.70 -32.23 11.52 21.88 0.25 -31.98 14 15 Si 0.99 32.80 29.56 68.60 2.03 34.82 14 16 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 17 H -0.26 -8.05 7.11 99.48 0.71 -7.34 14 18 H -0.26 -7.97 7.11 99.48 0.71 -7.26 14 19 H 0.42 10.30 9.06 -74.06 -0.67 9.63 14 20 H 0.42 11.59 9.06 -74.05 -0.67 10.92 14 21 H 0.30 11.93 8.29 -92.71 -0.77 11.17 14 Total: -1.00 -60.56 216.55 -2.33 -62.89 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.01 Total: 13.63 kcal Atomic # 6 Polarization: 39.41 SS G_CDS: 4.27 Total: 43.68 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -6.31 Total: -117.24 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.31 Total: -37.79 kcal Atomic # 14 Polarization: 32.80 SS G_CDS: 2.03 Total: 34.82 kcal Total: -60.56 -2.33 -62.89 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661475.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.993 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds