Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39045 * 119.23825 * 2 1 4 4 C 1.36863 * 119.77293 * 180.02562 * 3 2 1 5 5 C 1.41235 * 118.37035 * 359.97438 * 4 3 2 6 6 C 1.40902 * 120.71904 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99901 * 141.43771 * 6 5 4 8 8 C 1.40305 * 120.00457 * 321.43950 * 6 5 4 9 9 N 1.30600 * 120.00428 * 175.05168 * 8 6 5 10 10 Si 1.86803 * 119.99860 * 355.04994 * 8 6 5 11 11 H 1.48500 * 109.47139 * 89.10653 * 10 8 6 12 12 H 1.48504 * 109.47124 * 209.10622 * 10 8 6 13 13 H 1.48503 * 109.46860 * 329.10263 * 10 8 6 14 14 C 1.41805 * 118.55548 * 0.02562 * 5 4 3 15 15 C 1.47637 * 119.98170 * 179.97438 * 14 5 4 16 16 O 1.21495 * 119.99893 * 354.74810 * 15 14 5 17 17 O 1.34775 * 120.00150 * 174.75162 * 15 14 5 18 18 N 1.31560 * 119.24693 * 180.26993 * 2 1 3 19 19 H 1.08998 * 109.47037 * 90.00029 * 1 2 3 20 20 H 1.09004 * 109.46824 * 209.99929 * 1 2 3 21 21 H 1.09004 * 109.47098 * 330.00132 * 1 2 3 22 22 H 1.07994 * 120.11340 * 359.97438 * 3 2 1 23 23 H 1.08004 * 120.81576 * 179.97438 * 4 3 2 24 24 H 0.97002 * 120.00336 * 180.02562 * 9 8 6 25 25 H 0.96703 * 117.00038 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1862 1.2133 0.0000 4 6 3.5548 1.2261 -0.0005 5 6 4.2375 -0.0103 -0.0005 6 6 5.6458 -0.0549 -0.0016 7 1 6.1628 -0.8028 0.5814 8 6 6.3765 0.8721 -0.7599 9 7 7.6803 0.8934 -0.6860 10 14 5.4847 2.0761 -1.8755 11 1 5.1544 3.3065 -1.1125 12 1 6.3575 2.4258 -3.0249 13 1 4.2330 1.4531 -2.3761 14 6 3.4747 -1.2058 -0.0005 15 6 4.1559 -2.5156 -0.0011 16 8 5.3658 -2.5710 -0.0978 17 8 3.4358 -3.6498 0.1057 18 7 2.1498 -1.1479 -0.0054 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6357 2.1424 -0.0004 23 1 4.0994 2.1587 -0.0010 24 1 8.1855 1.5345 -1.2100 25 1 2.4763 -3.5552 0.1799 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662056.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -69.295520 kcal Electronic energy + Delta-G solvation = -13210.761480 eV Core-core repulsion = 10767.826354 eV Total energy + Delta-G solvation = -2442.935126 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48527 -37.91530 -35.47526 -34.20343 -32.00641 -31.40907 -28.22005 -25.25109 -23.00829 -21.58019 -20.53406 -17.90151 -17.54820 -15.94259 -15.25256 -14.68136 -14.49280 -14.04508 -13.77412 -13.41166 -12.94214 -12.32052 -12.20413 -11.95170 -11.68456 -11.26007 -11.07218 -10.68940 -10.55608 -10.22414 -9.69743 -9.15990 -8.74309 -8.53750 -7.85691 -7.17779 -4.77719 1.74596 2.33717 2.88314 2.99216 3.06960 3.59725 3.71890 4.35572 4.43365 5.08833 5.10386 5.60266 5.73245 5.93409 6.11040 6.13156 6.19566 6.43336 6.65489 6.83163 7.03146 7.25268 7.54420 8.11640 8.15727 8.29375 8.45371 8.76501 9.07038 9.78293 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.016589 C = 0.010923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.533315 B = 1687.426182 C = 2562.793112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.007 4.007 3 C -0.106 4.106 4 C -0.182 4.182 5 C 0.069 3.931 6 C -0.376 4.376 7 H 0.119 0.881 8 C 0.076 3.924 9 N -0.775 5.775 10 Si 0.910 3.090 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.243 1.243 14 C -0.099 4.099 15 C 0.548 3.452 16 O -0.463 6.463 17 O -0.526 6.526 18 N -0.427 5.427 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.111 0.889 23 H 0.117 0.883 24 H 0.293 0.707 25 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 2.583 -0.485 9.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C -0.126 4.126 4 C -0.208 4.208 5 C 0.062 3.938 6 C -0.403 4.403 7 H 0.137 0.863 8 C -0.147 4.147 9 N -0.397 5.397 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.167 1.167 14 C -0.235 4.235 15 C 0.392 3.608 16 O -0.347 6.347 17 O -0.336 6.336 18 N -0.139 5.139 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.129 0.871 23 H 0.135 0.865 24 H 0.104 0.896 25 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.735 1.555 -0.623 7.914 hybrid contribution -0.353 1.674 -0.446 1.768 sum -8.087 3.229 -1.069 8.773 Atomic orbital electron populations 1.20318 0.90536 1.01468 1.00999 1.20261 0.95202 0.88039 1.11762 1.21324 0.94701 0.97944 0.98633 1.21371 0.94205 0.97691 1.07484 1.18263 0.94563 0.90605 0.90351 1.20058 0.89496 1.10905 1.19814 0.86296 1.26402 0.95021 0.96256 0.97006 1.69507 1.07487 1.30362 1.32356 0.86354 0.80756 0.80035 0.79366 1.18905 1.20835 1.16676 1.20826 0.88920 0.93279 1.20504 1.19824 0.86097 0.81283 0.73631 1.90855 1.11960 1.86224 1.45656 1.84386 1.25946 1.36670 1.86632 1.66552 1.09400 1.30305 1.07677 0.92707 0.92108 0.92452 0.87079 0.86544 0.89587 0.73284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.15 36.01 0.37 -0.74 15 2 C -0.01 -0.14 6.79 -82.41 -0.56 -0.70 15 3 C -0.11 -2.09 9.65 -39.78 -0.38 -2.47 15 4 C -0.18 -4.08 7.01 -38.94 -0.27 -4.35 15 5 C 0.07 1.73 5.05 -106.39 -0.54 1.19 15 6 C -0.38 -10.17 8.10 -37.80 -0.31 -10.48 15 7 H 0.12 3.54 6.38 -52.48 -0.33 3.20 15 8 C 0.08 1.93 5.51 -17.30 -0.10 1.84 15 9 N -0.78 -20.01 13.92 55.57 0.77 -19.24 15 10 Si 0.91 19.50 24.50 -169.99 -4.16 15.34 15 11 H -0.26 -5.26 6.71 56.52 0.38 -4.88 15 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 13 H -0.24 -5.42 6.64 56.52 0.38 -5.04 15 14 C -0.10 -2.39 6.81 -82.33 -0.56 -2.95 15 15 C 0.55 13.35 8.35 34.57 0.29 13.64 15 16 O -0.46 -12.82 14.52 -19.26 -0.28 -13.10 15 17 O -0.53 -10.73 13.49 -40.70 -0.55 -11.27 15 18 N -0.43 -9.19 9.34 -5.50 -0.05 -9.24 15 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.06 0.72 8.07 -51.93 -0.42 0.30 15 22 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 23 H 0.12 2.49 4.92 -52.48 -0.26 2.23 15 24 H 0.29 6.72 8.29 -40.82 -0.34 6.38 15 25 H 0.41 6.58 8.24 45.56 0.38 6.95 15 LS Contribution 223.88 15.07 3.37 3.37 Total: -1.00 -29.30 223.88 -4.05 -33.34 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.09 Total: 5.83 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.06 Total: -5.03 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.72 Total: -28.48 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.83 Total: -24.37 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.16 Total: 15.34 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.30 -4.05 -33.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662056.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.953 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds