Wall clock time and date at job start Mon Mar 30 2020 02:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39045 * 119.23825 * 2 1 4 4 C 1.36863 * 119.77293 * 180.02562 * 3 2 1 5 5 C 1.41235 * 118.37035 * 359.97438 * 4 3 2 6 6 C 1.40902 * 120.71904 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99901 * 141.43771 * 6 5 4 8 8 C 1.40305 * 120.00457 * 321.43950 * 6 5 4 9 9 N 1.30600 * 120.00428 * 175.05168 * 8 6 5 10 10 Si 1.86803 * 119.99860 * 355.04994 * 8 6 5 11 11 H 1.48500 * 109.47139 * 89.10653 * 10 8 6 12 12 H 1.48504 * 109.47124 * 209.10622 * 10 8 6 13 13 H 1.48503 * 109.46860 * 329.10263 * 10 8 6 14 14 C 1.41805 * 118.55548 * 0.02562 * 5 4 3 15 15 C 1.47637 * 119.98170 * 179.97438 * 14 5 4 16 16 O 1.21495 * 119.99893 * 354.74810 * 15 14 5 17 17 O 1.34775 * 120.00150 * 174.75162 * 15 14 5 18 18 N 1.31560 * 119.24693 * 180.26993 * 2 1 3 19 19 H 1.08998 * 109.47037 * 90.00029 * 1 2 3 20 20 H 1.09004 * 109.46824 * 209.99929 * 1 2 3 21 21 H 1.09004 * 109.47098 * 330.00132 * 1 2 3 22 22 H 1.07994 * 120.11340 * 359.97438 * 3 2 1 23 23 H 1.08004 * 120.81576 * 179.97438 * 4 3 2 24 24 H 0.97002 * 120.00336 * 180.02562 * 9 8 6 25 25 H 0.96703 * 117.00038 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1862 1.2133 0.0000 4 6 3.5548 1.2261 -0.0005 5 6 4.2375 -0.0103 -0.0005 6 6 5.6458 -0.0549 -0.0016 7 1 6.1628 -0.8028 0.5814 8 6 6.3765 0.8721 -0.7599 9 7 7.6803 0.8934 -0.6860 10 14 5.4847 2.0761 -1.8755 11 1 5.1544 3.3065 -1.1125 12 1 6.3575 2.4258 -3.0249 13 1 4.2330 1.4531 -2.3761 14 6 3.4747 -1.2058 -0.0005 15 6 4.1559 -2.5156 -0.0011 16 8 5.3658 -2.5710 -0.0978 17 8 3.4358 -3.6498 0.1057 18 7 2.1498 -1.1479 -0.0054 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6357 2.1424 -0.0004 23 1 4.0994 2.1587 -0.0010 24 1 8.1855 1.5345 -1.2100 25 1 2.4763 -3.5552 0.1799 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662056.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:03 Heat of formation + Delta-G solvation = -91.198690 kcal Electronic energy + Delta-G solvation = -13211.711273 eV Core-core repulsion = 10767.826354 eV Total energy + Delta-G solvation = -2443.884919 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.28994 -39.72331 -37.33865 -36.01849 -33.73295 -33.08232 -29.78051 -27.00443 -24.75463 -23.32766 -22.28907 -19.75303 -19.31514 -17.71454 -17.02574 -16.53180 -16.32718 -15.68653 -15.46794 -14.93891 -14.67754 -14.11008 -13.79545 -13.43976 -13.03527 -12.83045 -12.66903 -12.50379 -12.35110 -11.98313 -11.45755 -11.04248 -10.44543 -10.27085 -9.62363 -9.00468 -6.70978 -0.04794 0.61633 1.17884 1.31494 1.39642 1.77760 1.99756 2.53157 2.64519 3.30105 3.47401 4.08332 4.16859 4.44711 4.51418 4.80263 4.90449 5.03582 5.10616 5.27687 5.38777 5.50367 5.87184 6.16935 6.34787 6.49089 6.59128 6.99085 7.30911 8.03318 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.016589 C = 0.010923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.533315 B = 1687.426182 C = 2562.793112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.097 4.097 4 C -0.190 4.190 5 C 0.057 3.943 6 C -0.424 4.424 7 H 0.068 0.932 8 C 0.036 3.964 9 N -0.825 5.825 10 Si 0.968 3.032 11 H -0.231 1.231 12 H -0.272 1.272 13 H -0.254 1.254 14 C -0.123 4.123 15 C 0.548 3.452 16 O -0.509 6.509 17 O -0.515 6.515 18 N -0.431 5.431 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.090 0.910 22 H 0.164 0.836 23 H 0.129 0.871 24 H 0.302 0.698 25 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 4.617 -1.052 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C -0.117 4.117 4 C -0.216 4.216 5 C 0.051 3.949 6 C -0.452 4.452 7 H 0.086 0.914 8 C -0.181 4.181 9 N -0.450 5.450 10 Si 0.789 3.211 11 H -0.155 1.155 12 H -0.198 1.198 13 H -0.178 1.178 14 C -0.256 4.256 15 C 0.393 3.607 16 O -0.398 6.398 17 O -0.327 6.327 18 N -0.144 5.144 19 H 0.093 0.907 20 H 0.088 0.912 21 H 0.108 0.892 22 H 0.181 0.819 23 H 0.146 0.854 24 H 0.113 0.887 25 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -11.710 3.557 -1.165 12.294 hybrid contribution 0.528 0.953 -0.194 1.106 sum -11.182 4.510 -1.360 12.134 Atomic orbital electron populations 1.20500 0.86151 1.03683 1.02941 1.21429 0.98036 0.87463 1.06735 1.21941 0.93718 1.00256 0.95764 1.21605 0.95700 0.96887 1.07393 1.18495 0.94030 0.92391 0.89940 1.19816 0.90783 1.11794 1.22809 0.91385 1.27197 0.95601 0.97592 0.97745 1.69550 1.08818 1.32226 1.34396 0.85504 0.79019 0.78697 0.77898 1.15470 1.19771 1.17751 1.20853 0.90153 0.92804 1.21759 1.20002 0.85794 0.82241 0.72673 1.90845 1.14052 1.87003 1.47854 1.84333 1.27465 1.35043 1.85871 1.66691 1.07731 1.31458 1.08475 0.90711 0.91166 0.89166 0.81882 0.85387 0.88678 0.71029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.15 71.24 0.72 -0.99 15 2 C 0.01 0.39 6.79 42.79 0.29 0.68 15 3 C -0.10 -3.32 9.65 22.14 0.21 -3.10 15 4 C -0.19 -8.01 7.01 22.68 0.16 -7.85 15 5 C 0.06 2.91 5.05 -21.01 -0.11 2.80 15 6 C -0.42 -24.34 8.10 23.43 0.19 -24.15 15 7 H 0.07 4.47 6.38 -2.91 -0.02 4.45 15 8 C 0.04 1.90 5.51 85.38 0.47 2.37 15 9 N -0.83 -45.02 13.92 21.89 0.30 -44.72 15 10 Si 0.97 39.55 24.50 68.60 1.68 41.23 15 11 H -0.23 -8.16 6.71 99.48 0.67 -7.49 15 12 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 13 H -0.25 -10.62 6.64 99.48 0.66 -9.95 15 14 C -0.12 -5.93 6.81 42.39 0.29 -5.64 15 15 C 0.55 27.58 8.35 70.30 0.59 28.17 15 16 O -0.51 -30.21 14.52 19.85 0.29 -29.92 15 17 O -0.51 -21.02 13.49 -56.86 -0.77 -21.79 15 18 N -0.43 -17.41 9.34 -171.31 -1.60 -19.01 15 19 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.07 1.52 8.14 -2.38 -0.02 1.51 15 21 H 0.09 1.55 8.07 -2.39 -0.02 1.53 15 22 H 0.16 3.95 8.06 -2.91 -0.02 3.92 15 23 H 0.13 5.06 4.92 -2.91 -0.01 5.04 15 24 H 0.30 14.47 8.29 -92.71 -0.77 13.70 15 25 H 0.43 13.22 8.24 -74.06 -0.61 12.61 15 Total: -1.00 -68.17 223.88 3.26 -64.91 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.54 Total: 17.01 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 2.82 Total: -7.71 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -1.30 Total: -63.73 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.48 Total: -51.71 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.68 Total: 41.23 kcal Total: -68.17 3.26 -64.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662056.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds