Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34518 * 125.35503 * 2 1 4 4 C 1.41233 * 107.11460 * 179.97438 * 3 2 1 5 5 O 1.34696 * 146.06713 * 180.02562 * 4 3 2 6 6 N 1.41609 * 107.99390 * 179.97438 * 5 4 3 7 7 C 1.30216 * 108.72603 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.77628 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 90.02154 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 C 1.38469 * 106.47291 * 0.22475 * 4 3 2 18 18 O 1.34299 * 125.35794 * 179.97438 * 2 1 3 19 19 H 1.09001 * 109.46979 * 90.00285 * 1 2 3 20 20 H 1.09001 * 109.46897 * 210.00618 * 1 2 3 21 21 H 1.09001 * 109.46781 * 330.00488 * 1 2 3 22 22 H 1.07996 * 126.44413 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.47152 * 330.02247 * 8 7 6 24 24 H 1.09001 * 109.46980 * 210.02348 * 8 7 6 25 25 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2854 1.0971 0.0000 4 6 3.6268 0.6550 0.0006 5 8 4.9235 1.0194 0.0013 6 7 5.7090 -0.1590 0.0021 7 6 4.9147 -1.1908 0.0013 8 6 5.3461 -2.6348 0.0013 9 6 5.4885 -3.1166 1.4221 10 1 5.2864 -2.4446 2.2430 11 6 5.8759 -4.4157 1.6739 12 7 6.1215 -5.2341 0.6742 13 14 6.0516 -5.0131 3.4350 14 1 4.7566 -5.5718 3.8998 15 1 7.0965 -6.0664 3.4985 16 1 6.4415 -3.8760 4.3069 17 6 3.5841 -0.7290 -0.0043 18 8 2.2842 -1.0953 0.0005 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9481 2.1230 -0.0004 23 1 6.3034 -2.7279 -0.5116 24 1 4.5979 -3.2375 -0.5136 25 1 6.3944 -6.1479 0.8514 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776119.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 59.274515 kcal Electronic energy + Delta-G solvation = -12866.278924 eV Core-core repulsion = 10428.919013 eV Total energy + Delta-G solvation = -2437.359911 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.85097 -39.83443 -34.42145 -32.92467 -32.29993 -30.87080 -28.39991 -26.52388 -23.64889 -21.89375 -20.85646 -19.69378 -17.00491 -16.79876 -16.35974 -16.14544 -14.57789 -14.52942 -13.96802 -13.23904 -13.04031 -12.70873 -12.52244 -12.37741 -12.21765 -11.34076 -11.09684 -10.98277 -10.61511 -10.47705 -9.98752 -9.49325 -8.91756 -8.55063 -8.16783 -6.18261 -4.23147 1.22186 2.38830 2.48331 2.95110 3.24809 3.26510 3.32444 3.38314 4.35175 4.58728 4.82026 5.02521 5.15335 5.22591 5.30117 5.33860 5.62000 5.80278 5.92928 6.33147 6.47614 7.14751 7.18842 7.27353 7.75813 7.86951 8.04352 8.78164 9.41120 10.92621 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.038233 B = 0.009065 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.170024 B = 3088.047299 C = 3447.786034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 C -0.200 4.200 4 C -0.002 4.002 5 O -0.080 6.080 6 N -0.302 5.302 7 C 0.200 3.800 8 C 0.076 3.924 9 C -0.520 4.520 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.904 3.096 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.105 4.105 18 O -0.141 6.141 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.162 0.838 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 8.628 -1.463 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 C -0.221 4.221 4 C -0.061 4.061 5 O -0.087 6.087 6 N -0.054 5.054 7 C 0.026 3.974 8 C 0.038 3.962 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.527 5.527 13 Si 0.731 3.269 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.157 4.157 18 O -0.038 6.038 19 H 0.106 0.894 20 H 0.103 0.897 21 H 0.112 0.888 22 H 0.179 0.821 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.773 8.683 -1.513 13.160 hybrid contribution -0.512 -0.493 0.932 1.172 sum -10.285 8.189 -0.581 13.160 Atomic orbital electron populations 1.20434 0.84024 1.04729 1.04109 1.22682 0.94470 0.82779 1.00569 1.20146 0.86421 1.00283 1.15204 1.21137 0.88758 0.93789 1.02445 1.89082 1.10909 1.28109 1.80628 1.80535 1.10224 0.88548 1.26113 1.23581 0.85104 0.99890 0.88846 1.18213 0.98804 0.79573 0.99611 1.20837 1.47803 0.96874 0.90357 0.92204 1.24950 0.94663 0.96318 0.97914 1.69938 1.45537 1.06317 1.30946 0.86392 0.78000 0.78598 0.83938 1.20359 1.20856 1.19637 1.21450 0.85271 0.91318 1.17665 1.83936 1.14042 1.32964 1.72812 0.89353 0.89686 0.88764 0.82050 0.93042 0.93036 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.40 36.01 0.37 -0.27 15 2 C 0.05 0.70 7.28 -35.62 -0.26 0.44 15 3 C -0.20 -2.99 10.77 -39.76 -0.43 -3.42 15 4 C 0.00 -0.04 8.36 -38.36 -0.32 -0.36 15 5 O -0.08 -1.77 12.15 7.91 0.10 -1.67 15 6 N -0.30 -7.29 12.90 33.77 0.44 -6.86 15 7 C 0.20 4.86 6.41 -82.29 -0.53 4.33 15 8 C 0.08 2.02 5.54 -29.03 -0.16 1.86 15 9 C -0.52 -14.82 9.09 -34.44 -0.31 -15.13 15 10 H 0.06 1.71 7.74 -52.49 -0.41 1.31 15 11 C 0.06 1.81 5.46 -17.82 -0.10 1.72 15 12 N -0.89 -25.86 13.29 55.43 0.74 -25.12 15 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 17 C -0.10 -2.31 8.15 -38.51 -0.31 -2.63 15 18 O -0.14 -2.74 10.67 3.62 0.04 -2.71 15 19 H 0.09 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.16 1.77 8.06 -52.49 -0.42 1.34 15 23 H 0.05 1.41 8.14 -51.93 -0.42 0.98 15 24 H 0.05 1.39 8.14 -51.93 -0.42 0.96 15 25 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 236.14 15.07 3.56 3.56 Total: -1.00 -31.72 236.14 -4.28 -36.00 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: -2.08 Total: -6.23 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.05 Total: -13.46 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 1.17 Total: -31.98 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.13 Total: -4.38 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.72 -4.28 -36.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776119.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.276 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds