Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34518 * 125.35503 * 2 1 4 4 C 1.41233 * 107.11460 * 179.97438 * 3 2 1 5 5 O 1.34696 * 146.06713 * 180.02562 * 4 3 2 6 6 N 1.41609 * 107.99390 * 179.97438 * 5 4 3 7 7 C 1.30216 * 108.72603 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.77628 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 90.02154 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 C 1.38469 * 106.47291 * 0.22475 * 4 3 2 18 18 O 1.34299 * 125.35794 * 179.97438 * 2 1 3 19 19 H 1.09001 * 109.46979 * 90.00285 * 1 2 3 20 20 H 1.09001 * 109.46897 * 210.00618 * 1 2 3 21 21 H 1.09001 * 109.46781 * 330.00488 * 1 2 3 22 22 H 1.07996 * 126.44413 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.47152 * 330.02247 * 8 7 6 24 24 H 1.09001 * 109.46980 * 210.02348 * 8 7 6 25 25 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2854 1.0971 0.0000 4 6 3.6268 0.6550 0.0006 5 8 4.9235 1.0194 0.0013 6 7 5.7090 -0.1590 0.0021 7 6 4.9147 -1.1908 0.0013 8 6 5.3461 -2.6348 0.0013 9 6 5.4885 -3.1166 1.4221 10 1 5.2864 -2.4446 2.2430 11 6 5.8759 -4.4157 1.6739 12 7 6.1215 -5.2341 0.6742 13 14 6.0516 -5.0131 3.4350 14 1 4.7566 -5.5718 3.8998 15 1 7.0965 -6.0664 3.4985 16 1 6.4415 -3.8760 4.3069 17 6 3.5841 -0.7290 -0.0043 18 8 2.2842 -1.0953 0.0005 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9481 2.1230 -0.0004 23 1 6.3034 -2.7279 -0.5116 24 1 4.5979 -3.2375 -0.5136 25 1 6.3944 -6.1479 0.8514 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776119.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 37.901022 kcal Electronic energy + Delta-G solvation = -12867.205748 eV Core-core repulsion = 10428.919013 eV Total energy + Delta-G solvation = -2438.286735 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.33638 -41.44907 -36.34219 -34.58058 -33.92616 -32.10804 -30.48072 -27.79567 -25.74717 -23.40627 -22.21420 -21.38470 -18.82504 -18.55690 -17.97026 -17.79405 -16.55631 -16.09411 -15.12895 -14.61274 -14.53232 -14.30916 -14.17129 -13.74746 -13.39864 -13.05506 -12.87958 -12.70868 -12.52140 -12.25270 -12.08329 -11.39915 -10.71815 -10.50659 -9.60867 -8.34899 -6.49455 -0.29486 0.90726 1.11095 1.26301 1.38657 1.39737 1.51915 1.82092 2.35062 2.97762 3.05457 3.43648 3.67708 3.96053 4.20926 4.45221 4.59185 4.75884 4.82744 4.89064 5.04772 5.10811 5.34844 5.54372 5.77755 5.88579 6.11336 6.56438 7.19560 8.76922 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.038233 B = 0.009065 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.170024 B = 3088.047299 C = 3447.786034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 C -0.201 4.201 4 C 0.004 3.996 5 O -0.079 6.079 6 N -0.333 5.333 7 C 0.184 3.816 8 C 0.086 3.914 9 C -0.544 4.544 10 H 0.051 0.949 11 C 0.017 3.983 12 N -0.920 5.920 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.270 1.270 17 C -0.152 4.152 18 O -0.164 6.164 19 H 0.115 0.885 20 H 0.090 0.910 21 H 0.132 0.868 22 H 0.210 0.790 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 9.697 -0.478 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 C -0.221 4.221 4 C -0.056 4.056 5 O -0.088 6.088 6 N -0.084 5.084 7 C 0.011 3.989 8 C 0.048 3.952 9 C -0.583 4.583 10 H 0.069 0.931 11 C -0.184 4.184 12 N -0.558 5.558 13 Si 0.798 3.202 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.204 4.204 18 O -0.062 6.062 19 H 0.133 0.867 20 H 0.109 0.891 21 H 0.150 0.850 22 H 0.227 0.773 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.254 9.743 -0.541 15.665 hybrid contribution 0.079 -0.749 0.564 0.941 sum -12.175 8.994 0.023 15.137 Atomic orbital electron populations 1.20869 0.79113 1.06847 1.06380 1.24059 0.96671 0.81219 0.95935 1.20800 0.83370 1.02804 1.15083 1.21959 0.89341 0.93362 1.00913 1.89010 1.12163 1.27052 1.80563 1.80431 1.11187 0.89232 1.27567 1.23173 0.87091 0.98769 0.89823 1.17873 0.97208 0.81441 0.98696 1.21051 1.48861 0.97514 0.90860 0.93088 1.25875 0.93721 0.96127 1.02636 1.70036 1.45641 1.06847 1.33262 0.85304 0.78682 0.78114 0.78126 1.18975 1.19638 1.19477 1.21197 0.85736 0.92259 1.21236 1.83943 1.13237 1.35424 1.73566 0.86691 0.89099 0.84995 0.77265 0.95208 0.94498 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.40 71.24 0.74 -0.14 15 2 C 0.07 1.89 7.28 24.84 0.18 2.07 15 3 C -0.20 -5.31 10.77 22.15 0.24 -5.07 15 4 C 0.00 0.14 8.36 23.06 0.19 0.33 15 5 O -0.08 -3.52 12.15 30.56 0.37 -3.15 15 6 N -0.33 -16.78 12.90 -47.06 -0.61 -17.39 15 7 C 0.18 9.41 6.41 43.44 0.28 9.69 15 8 C 0.09 4.85 5.54 29.10 0.16 5.01 15 9 C -0.54 -32.23 9.09 25.60 0.23 -32.00 15 10 H 0.05 3.03 7.74 -2.91 -0.02 3.01 15 11 C 0.02 0.95 5.46 84.66 0.46 1.41 15 12 N -0.92 -54.58 13.29 21.45 0.28 -54.30 15 13 Si 0.97 44.29 29.54 68.60 2.03 46.31 15 14 H -0.26 -11.43 7.11 99.48 0.71 -10.73 15 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 17 C -0.15 -6.85 8.15 22.96 0.19 -6.67 15 18 O -0.16 -6.28 10.67 -9.96 -0.11 -6.39 15 19 H 0.11 0.88 8.14 -2.39 -0.02 0.86 15 20 H 0.09 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.13 0.66 8.14 -2.39 -0.02 0.64 15 22 H 0.21 3.39 8.06 -2.91 -0.02 3.37 15 23 H 0.03 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.04 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 Total: -1.00 -72.37 236.14 5.85 -66.52 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: 1.21 Total: -6.25 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 2.67 Total: -25.35 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -0.32 Total: -71.69 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.27 Total: -9.54 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.37 5.85 -66.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776119.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.418 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds