Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47121 * 274.96822 * 3 2 1 5 5 H 1.48500 * 109.47344 * 34.96187 * 3 2 1 6 6 H 1.48495 * 109.47362 * 154.96413 * 3 2 1 7 7 C 1.40149 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.85764 * 7 2 1 9 9 C 1.40376 * 120.00181 * 5.86286 * 7 2 1 10 10 N 1.37711 * 127.47098 * 352.09919 * 9 7 2 11 11 H 0.97004 * 126.06874 * 0.23903 * 10 9 7 12 12 N 1.28658 * 107.87458 * 180.26401 * 10 9 7 13 13 N 1.28396 * 111.33464 * 0.02562 * 12 10 9 14 14 C 1.33062 * 109.78618 * 0.02562 * 13 12 10 15 15 C 1.50703 * 127.02295 * 179.97438 * 14 13 12 16 16 F 1.39894 * 109.46595 * 270.02010 * 15 14 13 17 17 F 1.39899 * 109.47159 * 30.02245 * 15 14 13 18 18 F 1.39899 * 109.46945 * 150.02177 * 15 14 13 19 19 H 0.96994 * 119.99881 * 0.02562 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.3842 2.1070 -1.3948 5 1 1.4956 2.6201 0.8023 6 1 3.5878 1.4122 0.5925 7 6 2.0085 -1.2137 0.0005 8 1 3.0842 -1.2161 0.0960 9 6 1.3121 -2.4263 -0.1231 10 7 -0.0519 -2.6149 -0.1030 11 1 -0.7229 -1.9217 -0.0021 12 7 -0.2786 -3.8738 -0.2412 13 7 0.8159 -4.5362 -0.3507 14 6 1.8535 -3.7058 -0.2858 15 6 3.3135 -4.0693 -0.3711 16 9 3.8040 -4.3332 0.9122 17 9 3.4648 -5.2068 -1.1714 18 9 4.0269 -3.0053 -0.9334 19 1 -0.4850 0.8400 -0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259782701.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -110.065811 kcal Electronic energy + Delta-G solvation = -13639.106881 eV Core-core repulsion = 10549.006739 eV Total energy + Delta-G solvation = -3090.100142 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.031 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.88351 -48.41352 -48.39211 -43.16811 -36.24602 -33.61589 -32.41258 -28.63583 -26.32290 -23.51873 -22.30810 -20.53900 -19.31075 -19.18493 -18.66481 -17.17304 -16.62218 -16.31079 -15.31952 -15.27586 -15.04590 -14.87535 -14.63161 -14.58970 -13.85987 -13.78326 -13.17394 -12.86401 -12.24849 -11.91363 -11.64803 -11.53297 -11.05776 -10.15465 -9.19582 -6.98065 0.92572 1.40158 1.56001 1.58136 1.69742 1.85675 2.11517 2.64754 2.82578 3.15758 3.37620 3.74453 4.49110 4.91779 5.02068 5.06817 5.69409 6.08257 6.38021 6.91883 7.90565 8.07366 Molecular weight = 207.03amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.014464 C = 0.011153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.567323 B = 1935.392629 C = 2509.877113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.039 3.961 3 Si 1.015 2.985 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.438 4.438 8 H 0.118 0.882 9 C 0.217 3.783 10 N -0.442 5.442 11 H 0.452 0.548 12 N -0.173 5.173 13 N -0.244 5.244 14 C -0.304 4.304 15 C 0.584 3.416 16 F -0.185 7.185 17 F -0.182 7.182 18 F -0.171 7.171 19 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 4.548 0.153 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.179 4.179 3 Si 0.833 3.167 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.174 1.174 7 C -0.474 4.474 8 H 0.135 0.865 9 C 0.091 3.909 10 N -0.174 5.174 11 H 0.307 0.693 12 N -0.151 5.151 13 N -0.116 5.116 14 C -0.445 4.445 15 C 0.528 3.472 16 F -0.167 7.167 17 F -0.163 7.163 18 F -0.152 7.152 19 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.145 3.455 0.055 4.672 hybrid contribution 0.552 1.498 0.088 1.599 sum 3.697 4.953 0.143 6.182 Atomic orbital electron populations 1.68805 1.09362 1.33581 1.34243 1.27165 0.95784 1.05720 0.89264 0.84634 0.78936 0.73196 0.79922 1.18258 1.18290 1.17439 1.19590 0.96977 0.88009 1.42790 0.86464 1.19727 0.83206 0.94370 0.93632 1.45500 1.07549 1.06960 1.57355 0.69336 1.77389 1.19366 0.90820 1.27529 1.73855 0.95163 1.28686 1.13911 1.21622 0.93503 0.92890 1.36459 1.16293 0.84308 0.73479 0.73162 1.93139 1.89468 1.93963 1.40102 1.93113 1.96411 1.52493 1.74281 1.93128 1.80053 1.56782 1.85248 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -35.12 10.87 21.87 0.24 -34.89 13 2 C 0.04 1.61 5.49 85.31 0.47 2.08 13 3 Si 1.02 31.39 29.57 68.60 2.03 33.42 13 4 H -0.26 -7.81 7.11 99.48 0.71 -7.11 13 5 H -0.26 -7.46 7.11 99.48 0.71 -6.76 13 6 H -0.25 -7.66 7.11 99.48 0.71 -6.96 13 7 C -0.44 -20.65 8.76 23.26 0.20 -20.44 13 8 H 0.12 5.27 6.57 -2.91 -0.02 5.25 13 9 C 0.22 11.16 6.80 39.14 0.27 11.43 13 10 N -0.44 -22.47 6.73 -51.05 -0.34 -22.81 13 11 H 0.45 21.52 6.52 -219.89 -1.43 20.08 13 12 N -0.17 -9.11 13.30 37.02 0.49 -8.62 13 13 N -0.24 -13.13 12.29 -46.30 -0.57 -13.70 13 14 C -0.30 -15.67 6.71 42.77 0.29 -15.38 13 15 C 0.58 26.36 3.51 71.24 0.25 26.61 13 16 F -0.19 -8.00 17.30 44.97 0.78 -7.22 13 17 F -0.18 -7.89 17.28 44.97 0.78 -7.11 13 18 F -0.17 -7.25 15.34 44.97 0.69 -6.56 13 19 H 0.31 11.54 8.29 -92.71 -0.77 10.77 13 Total: -1.00 -53.37 196.65 5.46 -47.91 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.10 Total: 15.29 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 1.48 Total: 4.29 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -0.18 Total: -80.01 kcal Atomic # 9 Polarization: -23.14 SS G_CDS: 2.25 Total: -20.90 kcal Atomic # 14 Polarization: 31.39 SS G_CDS: 2.03 Total: 33.42 kcal Total: -53.37 5.46 -47.91 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782701.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.156 kcal (2) G-P(sol) polarization free energy of solvation -53.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds