Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99840 * 2 1 4 4 H 1.48502 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47261 * 299.99773 * 3 2 1 6 6 H 1.48497 * 109.47399 * 60.00162 * 3 2 1 7 7 C 1.37870 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47609 * 180.02562 * 9 7 2 11 11 C 1.34344 * 126.11479 * 265.02617 * 10 9 7 12 12 N 1.36574 * 109.10454 * 179.73469 * 11 10 9 13 13 H 0.97000 * 125.62602 * 180.02562 * 12 11 10 14 14 C 1.39453 * 108.74321 * 0.02562 * 12 11 10 15 15 C 1.40126 * 140.10592 * 179.97438 * 14 12 11 16 16 C 1.32573 * 115.59561 * 179.97438 * 15 14 12 17 17 S 1.75618 * 110.39621 * 0.05888 * 16 15 14 18 18 C 1.37531 * 106.82290 * 359.97438 * 14 12 11 19 19 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46932 * 59.99668 * 9 7 2 21 21 H 1.09004 * 109.46865 * 300.00268 * 9 7 2 22 22 H 1.07996 * 125.44555 * 359.71472 * 11 10 9 23 23 H 1.08003 * 122.20125 * 359.97438 * 15 14 12 24 24 H 1.07999 * 124.80066 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6734 -4.3076 -1.0817 12 7 3.5529 -5.2739 -0.6842 13 1 4.0164 -5.8920 -1.2708 14 6 3.6748 -5.2252 0.7041 15 6 4.3529 -5.8701 1.7471 16 6 4.1011 -5.4101 2.9647 17 16 2.9506 -4.0852 2.8927 18 6 2.8537 -4.2118 1.1404 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.3806 -4.1085 -2.1020 23 1 5.0357 -6.6881 1.5706 24 1 4.5409 -5.7959 3.8725 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819963.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = 61.567670 kcal Electronic energy + Delta-G solvation = -10814.217882 eV Core-core repulsion = 8819.710281 eV Total energy + Delta-G solvation = -1994.507601 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.46617 -34.90223 -33.24313 -31.00799 -27.84097 -26.43238 -23.05824 -22.26028 -19.74477 -19.02248 -17.09371 -16.14544 -14.83480 -14.45213 -14.25972 -13.96009 -13.54751 -12.47385 -12.21437 -11.83319 -11.37559 -11.08479 -11.00987 -10.58993 -10.36957 -10.19328 -9.65565 -9.38918 -8.59062 -8.32569 -7.41624 -6.84246 -5.92952 -3.96157 1.60257 2.21841 2.78775 3.28342 3.35220 3.42086 3.46820 3.60866 3.71183 4.53703 5.30480 5.40211 5.59880 5.77859 5.90235 6.27836 6.34833 6.70526 6.85570 7.34237 7.50531 7.69767 7.91825 8.02982 8.15309 8.47769 9.09319 9.67037 11.15959 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.041150 B = 0.009823 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.275376 B = 2849.902054 C = 3148.939664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.077 3.923 10 C -0.079 4.079 11 C 0.013 3.987 12 N -0.569 5.569 13 H 0.407 0.593 14 C 0.012 3.988 15 C -0.106 4.106 16 C -0.224 4.224 17 S 0.124 5.876 18 C -0.183 4.183 19 H 0.260 0.740 20 H 0.027 0.973 21 H 0.025 0.975 22 H 0.168 0.832 23 H 0.126 0.874 24 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -10.600 1.731 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.039 3.961 10 C -0.089 4.089 11 C -0.116 4.116 12 N -0.171 5.171 13 H 0.243 0.757 14 C -0.102 4.102 15 C -0.141 4.141 16 C -0.360 4.360 17 S 0.385 5.615 18 C -0.305 4.305 19 H 0.069 0.931 20 H 0.045 0.955 21 H 0.043 0.957 22 H 0.186 0.814 23 H 0.144 0.856 24 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.230 -9.657 2.727 11.811 hybrid contribution 1.397 -0.238 -1.400 1.992 sum 7.627 -9.896 1.326 12.564 Atomic orbital electron populations 1.69974 1.05952 1.26452 1.51247 1.25003 0.94844 0.99101 0.95515 0.86536 0.80200 0.83802 0.77514 1.19757 1.21088 1.21005 1.21154 0.93075 0.90077 1.49885 0.92617 1.17772 0.91828 0.88622 0.97873 1.19632 1.01808 0.99220 0.88193 1.21590 0.97271 0.93432 0.99342 1.41716 1.39691 1.31596 1.04121 0.75687 1.18265 1.05206 1.02236 0.84529 1.18727 1.02858 1.02308 0.90190 1.25041 1.06716 1.03929 1.00319 1.83899 1.43983 1.33531 1.00126 1.22773 1.06999 1.03537 0.97217 0.93076 0.95502 0.95654 0.81444 0.85574 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 14 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 14 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 14 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 14 7 C -0.50 -14.55 9.09 -34.44 -0.31 -14.86 14 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 14 9 C 0.08 2.05 5.47 -29.04 -0.16 1.89 14 10 C -0.08 -1.80 5.33 -104.62 -0.56 -2.36 14 11 C 0.01 0.25 11.78 -16.81 -0.20 0.05 14 12 N -0.57 -9.26 6.21 -10.78 -0.07 -9.33 14 13 H 0.41 4.86 8.96 -40.82 -0.37 4.49 14 14 C 0.01 0.21 7.71 -83.94 -0.65 -0.43 14 15 C -0.11 -1.64 10.17 -40.78 -0.41 -2.05 14 16 C -0.22 -3.37 11.13 28.83 0.32 -3.05 14 17 S 0.12 2.32 23.31 -107.50 -2.51 -0.18 14 18 C -0.18 -3.93 7.26 -38.46 -0.28 -4.21 14 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 14 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 14 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 14 22 H 0.17 2.71 8.06 -52.49 -0.42 2.28 14 23 H 0.13 1.53 8.06 -52.48 -0.42 1.10 14 24 H 0.16 1.83 8.06 -52.49 -0.42 1.40 14 LS Contribution 232.52 15.07 3.50 3.50 Total: -1.00 -32.25 232.52 -7.72 -39.97 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -2.02 Total: -1.23 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -2.34 Total: -23.51 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.67 Total: -35.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.51 Total: -0.18 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.25 -7.72 -39.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819963.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.534 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds