Wall clock time and date at job start Mon Mar 30 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34473 * 126.55214 * 2 1 4 4 N 1.34282 * 108.44247 * 179.83652 * 3 2 1 5 5 C 1.31653 * 109.39029 * 0.43779 * 4 3 2 6 6 N 1.38049 * 143.40403 * 179.73069 * 5 4 3 7 7 H 0.97002 * 126.13317 * 359.97438 * 6 5 4 8 8 C 1.39285 * 107.73343 * 180.02562 * 6 5 4 9 9 C 1.39975 * 126.37014 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00047 * 180.02562 * 9 8 6 11 11 C 1.39764 * 119.99776 * 0.02562 * 9 8 6 12 12 N 1.31119 * 120.00166 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99733 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47130 * 59.99847 * 13 11 9 15 15 H 1.48504 * 109.47244 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47396 * 299.99847 * 13 11 9 17 17 C 1.39055 * 107.26306 * 0.02562 * 8 6 5 18 18 O 1.35274 * 126.08399 * 179.97438 * 17 8 6 19 19 N 1.36314 * 108.20893 * 359.73533 * 5 4 3 20 20 H 1.09002 * 109.47152 * 269.68738 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68839 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68820 * 1 2 3 23 23 H 1.07998 * 125.78250 * 359.97438 * 3 2 1 24 24 H 0.97000 * 119.99926 * 179.97438 * 12 11 9 25 25 H 0.96699 * 114.00337 * 270.02528 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0802 0.0000 4 7 3.5842 0.6628 0.0036 5 6 3.6136 -0.6533 -0.0036 6 7 4.4612 -1.7430 -0.0095 7 1 5.4308 -1.7134 -0.0097 8 6 3.6745 -2.8924 -0.0164 9 6 4.1358 -4.2139 -0.0243 10 1 3.4308 -5.0319 -0.0296 11 6 5.5089 -4.4747 -0.0254 12 7 6.3649 -3.4816 -0.0195 13 14 6.1245 -6.2383 -0.0352 14 1 5.6270 -6.9295 -1.2518 15 1 7.6095 -6.2443 -0.0355 16 1 5.6264 -6.9433 1.1731 17 6 2.3457 -2.4829 -0.0150 18 8 1.2623 -3.2930 -0.0207 19 7 2.3286 -1.1081 -0.0061 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9802 2.1093 -0.0004 24 1 7.3179 -3.6626 -0.0199 25 1 0.9483 -3.5237 -0.9057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259877248.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:58 Heat of formation + Delta-G solvation = 49.511346 kcal Electronic energy + Delta-G solvation = -13273.873381 eV Core-core repulsion = 10868.382859 eV Total energy + Delta-G solvation = -2405.490522 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.70168 -37.31942 -35.69919 -33.68253 -31.66841 -30.01213 -28.59412 -24.85038 -24.76035 -20.80808 -20.44829 -19.32644 -17.48855 -16.54897 -15.62124 -15.23295 -14.76393 -14.46898 -13.72490 -13.18977 -12.76298 -12.50874 -12.16458 -11.94941 -11.76161 -11.63722 -11.08848 -10.71064 -10.70241 -9.94771 -9.61657 -9.55407 -8.86179 -7.39319 -7.35395 -6.32341 -4.76222 2.63948 2.86147 2.90269 3.17588 3.48244 3.60284 3.85659 4.20591 4.23289 4.80410 5.49013 5.78045 5.94300 6.16319 6.18936 6.34520 6.47069 6.73966 6.94908 7.07010 7.51992 7.54032 7.87366 8.09302 8.29860 8.59620 8.74976 9.13711 9.45801 9.70595 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055392 B = 0.010356 C = 0.008773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.366975 B = 2703.053609 C = 3190.735393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.098 4.098 3 C -0.002 4.002 4 N -0.535 5.535 5 C 0.360 3.640 6 N -0.571 5.571 7 H 0.442 0.558 8 C 0.301 3.699 9 C -0.426 4.426 10 H 0.109 0.891 11 C 0.071 3.929 12 N -0.824 5.824 13 Si 0.945 3.055 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.259 1.259 17 C -0.089 4.089 18 O -0.435 6.435 19 N -0.361 5.361 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.162 0.838 24 H 0.298 0.702 25 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -1.321 -1.465 3.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.214 4.214 3 C -0.155 4.155 4 N -0.265 5.265 5 C 0.012 3.988 6 N -0.204 5.204 7 H 0.293 0.707 8 C 0.189 3.811 9 C -0.459 4.459 10 H 0.126 0.874 11 C -0.146 4.146 12 N -0.453 5.453 13 Si 0.768 3.232 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.184 1.184 17 C -0.234 4.234 18 O -0.233 6.233 19 N -0.045 5.045 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.179 0.821 24 H 0.109 0.891 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.827 -0.889 -0.826 2.193 hybrid contribution -0.119 -1.120 -0.582 1.268 sum -1.946 -2.009 -1.408 3.131 Atomic orbital electron populations 1.19834 0.88772 1.01324 1.00977 1.20304 0.93272 0.84831 1.22964 1.21538 0.87490 0.97200 1.09231 1.70078 1.21862 1.03473 1.31062 1.20540 0.80391 0.88277 1.09619 1.42371 1.09124 0.99598 1.69349 0.70679 1.17613 0.84355 0.86584 0.92520 1.18804 0.92483 0.90388 1.44206 0.87357 1.26158 0.96184 1.01484 0.90818 1.68899 1.05107 1.34068 1.37274 0.85729 0.77816 0.79284 0.80390 1.18435 1.19930 1.18367 1.17085 0.86466 0.76507 1.43331 1.85015 1.44576 1.63630 1.30048 1.43434 1.08154 1.05499 1.47460 0.92803 0.93011 0.91573 0.82111 0.89071 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.44 36.01 0.38 -0.52 15 2 C -0.10 -2.23 7.26 -81.17 -0.59 -2.82 15 3 C 0.00 -0.05 11.76 -17.81 -0.21 -0.26 15 4 N -0.54 -13.66 11.29 -13.87 -0.16 -13.81 15 5 C 0.36 9.60 9.59 -319.29 -3.06 6.54 15 6 N -0.57 -14.89 5.92 -10.89 -0.06 -14.95 15 7 H 0.44 11.16 6.33 -40.82 -0.26 10.90 15 8 C 0.30 7.88 6.72 -83.52 -0.56 7.32 15 9 C -0.43 -10.36 9.28 -38.36 -0.36 -10.71 15 10 H 0.11 2.49 7.84 -52.49 -0.41 2.08 15 11 C 0.07 1.58 5.49 -17.29 -0.09 1.48 15 12 N -0.82 -18.83 10.70 55.54 0.59 -18.24 15 13 Si 0.94 16.75 29.56 -169.99 -5.02 11.73 15 14 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 15 H -0.27 -4.75 7.11 56.52 0.40 -4.34 15 16 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 17 C -0.09 -2.31 8.45 -14.71 -0.12 -2.43 15 18 O -0.43 -10.10 13.58 -17.51 -0.24 -10.34 15 19 N -0.36 -9.36 3.46 -58.67 -0.20 -9.57 15 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.16 2.88 8.06 -52.49 -0.42 2.46 15 24 H 0.30 6.11 8.30 -40.82 -0.34 5.78 15 25 H 0.33 6.24 9.06 45.56 0.41 6.65 15 LS Contribution 228.85 15.07 3.45 3.45 Total: -1.00 -29.11 228.85 -7.35 -36.46 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -1.08 Total: 16.69 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -4.62 Total: -1.41 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.17 Total: -56.57 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.24 Total: -10.34 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.02 Total: 11.73 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.11 -7.35 -36.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877248.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.969 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds