Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34473 * 126.55214 * 2 1 4 4 N 1.34282 * 108.44247 * 179.83652 * 3 2 1 5 5 C 1.31653 * 109.39029 * 0.43779 * 4 3 2 6 6 N 1.38049 * 143.40403 * 179.73069 * 5 4 3 7 7 H 0.97002 * 126.13317 * 359.97438 * 6 5 4 8 8 C 1.39285 * 107.73343 * 180.02562 * 6 5 4 9 9 C 1.39975 * 126.37014 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00047 * 180.02562 * 9 8 6 11 11 C 1.39764 * 119.99776 * 0.02562 * 9 8 6 12 12 N 1.31119 * 120.00166 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99733 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47130 * 59.99847 * 13 11 9 15 15 H 1.48504 * 109.47244 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47396 * 299.99847 * 13 11 9 17 17 C 1.39055 * 107.26306 * 0.02562 * 8 6 5 18 18 O 1.35274 * 126.08399 * 179.97438 * 17 8 6 19 19 N 1.36314 * 108.20893 * 359.73533 * 5 4 3 20 20 H 1.09002 * 109.47152 * 269.68738 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68839 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68820 * 1 2 3 23 23 H 1.07998 * 125.78250 * 359.97438 * 3 2 1 24 24 H 0.97000 * 119.99926 * 179.97438 * 12 11 9 25 25 H 0.96699 * 114.00337 * 270.02528 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0802 0.0000 4 7 3.5842 0.6628 0.0036 5 6 3.6136 -0.6533 -0.0036 6 7 4.4612 -1.7430 -0.0095 7 1 5.4308 -1.7134 -0.0097 8 6 3.6745 -2.8924 -0.0164 9 6 4.1358 -4.2139 -0.0243 10 1 3.4308 -5.0319 -0.0296 11 6 5.5089 -4.4747 -0.0254 12 7 6.3649 -3.4816 -0.0195 13 14 6.1245 -6.2383 -0.0352 14 1 5.6270 -6.9295 -1.2518 15 1 7.6095 -6.2443 -0.0355 16 1 5.6264 -6.9433 1.1731 17 6 2.3457 -2.4829 -0.0150 18 8 1.2623 -3.2930 -0.0207 19 7 2.3286 -1.1081 -0.0061 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9802 2.1093 -0.0004 24 1 7.3179 -3.6626 -0.0199 25 1 0.9483 -3.5237 -0.9057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877248.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 30.942561 kcal Electronic energy + Delta-G solvation = -13274.678584 eV Core-core repulsion = 10868.382859 eV Total energy + Delta-G solvation = -2406.295725 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.55154 -39.15448 -37.52713 -35.45936 -33.47068 -31.69824 -30.43933 -26.67810 -26.44954 -22.62369 -22.35171 -21.17618 -19.29623 -18.35139 -17.36861 -17.07987 -16.54623 -16.31471 -15.37458 -14.97582 -14.42369 -14.02651 -13.82367 -13.44410 -13.32320 -13.18485 -12.89779 -12.38325 -12.12866 -11.70751 -11.51502 -11.22416 -10.73548 -9.25392 -9.06301 -8.17146 -6.62920 0.99480 1.40655 1.54109 1.56448 1.76005 2.00868 2.11497 2.35487 2.41074 2.99526 3.75573 4.07929 4.46940 4.50699 4.67364 4.82949 4.99009 5.05786 5.17935 5.26118 5.66940 5.79351 6.09861 6.28542 6.49447 6.79238 6.87492 7.30023 7.58274 8.01707 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055392 B = 0.010356 C = 0.008773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.366975 B = 2703.053609 C = 3190.735393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.110 4.110 3 C -0.008 4.008 4 N -0.556 5.556 5 C 0.323 3.677 6 N -0.578 5.578 7 H 0.439 0.561 8 C 0.277 3.723 9 C -0.448 4.448 10 H 0.115 0.885 11 C 0.035 3.965 12 N -0.842 5.842 13 Si 1.020 2.980 14 H -0.253 1.253 15 H -0.264 1.264 16 H -0.257 1.257 17 C -0.117 4.117 18 O -0.439 6.439 19 N -0.372 5.372 20 H 0.063 0.937 21 H 0.047 0.953 22 H 0.104 0.896 23 H 0.205 0.795 24 H 0.309 0.691 25 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -1.911 -1.625 3.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.224 4.224 3 C -0.159 4.159 4 N -0.287 5.287 5 C -0.024 4.024 6 N -0.212 5.212 7 H 0.290 0.710 8 C 0.165 3.835 9 C -0.481 4.481 10 H 0.133 0.867 11 C -0.180 4.180 12 N -0.471 5.471 13 Si 0.838 3.162 14 H -0.176 1.176 15 H -0.188 1.188 16 H -0.181 1.181 17 C -0.262 4.262 18 O -0.238 6.238 19 N -0.057 5.057 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.122 0.878 23 H 0.221 0.779 24 H 0.121 0.879 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.241 -1.447 -0.992 2.846 hybrid contribution -0.007 -0.875 -0.539 1.028 sum -2.248 -2.322 -1.531 3.576 Atomic orbital electron populations 1.19980 0.85261 1.03039 1.02135 1.21311 0.95614 0.84040 1.21482 1.22321 0.86284 0.99165 1.08096 1.70060 1.23805 1.03166 1.31622 1.20915 0.81168 0.88879 1.11486 1.42376 1.09005 0.99768 1.70056 0.70984 1.18116 0.84892 0.87324 0.93149 1.19165 0.93934 0.89969 1.44999 0.86676 1.27162 0.95508 1.05915 0.89394 1.68911 1.06001 1.36134 1.36066 0.84637 0.77563 0.73455 0.80523 1.17644 1.18833 1.18093 1.17265 0.87026 0.77018 1.44896 1.84904 1.43886 1.63223 1.31808 1.43711 1.08439 1.05965 1.47558 0.91777 0.93364 0.87770 0.77873 0.87896 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.52 10.44 71.24 0.74 -0.77 15 2 C -0.11 -4.86 7.26 40.73 0.30 -4.56 15 3 C -0.01 -0.34 11.76 83.46 0.98 0.64 15 4 N -0.56 -28.45 11.29 -197.79 -2.23 -30.69 15 5 C 0.32 17.56 9.59 260.26 2.49 20.06 15 6 N -0.58 -31.03 5.92 -188.38 -1.12 -32.14 15 7 H 0.44 22.93 6.33 -92.71 -0.59 22.34 15 8 C 0.28 14.79 6.72 38.57 0.26 15.05 15 9 C -0.45 -21.95 9.28 23.06 0.21 -21.74 15 10 H 0.12 5.30 7.84 -2.91 -0.02 5.27 15 11 C 0.04 1.56 5.49 85.17 0.47 2.02 15 12 N -0.84 -38.40 10.70 21.81 0.23 -38.17 15 13 Si 1.02 32.95 29.56 68.60 2.03 34.98 15 14 H -0.25 -7.84 7.11 99.48 0.71 -7.14 15 15 H -0.26 -8.04 7.11 99.48 0.71 -7.33 15 16 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 17 C -0.12 -6.19 8.45 84.00 0.71 -5.48 15 18 O -0.44 -20.37 13.58 -85.58 -1.16 -21.53 15 19 N -0.37 -19.39 3.46 -449.80 -1.56 -20.95 15 20 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.10 2.59 8.14 -2.38 -0.02 2.57 15 23 H 0.20 6.66 8.06 -2.91 -0.02 6.64 15 24 H 0.31 12.46 8.30 -92.71 -0.77 11.69 15 25 H 0.35 13.13 9.06 -74.06 -0.67 12.46 15 Total: -1.00 -63.04 228.85 2.35 -60.69 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.01 Total: 42.58 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.17 Total: 5.22 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -4.67 Total: -121.94 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -1.16 Total: -21.53 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 2.03 Total: 34.98 kcal Total: -63.04 2.35 -60.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877248.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.636 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds