Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99989 * 2 1 4 4 H 1.48500 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46847 * 299.99740 * 3 2 1 6 6 H 1.48496 * 109.47260 * 59.99301 * 3 2 1 7 7 C 1.37880 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99408 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.31328 * 59.62652 * 9 7 2 11 11 C 1.53435 * 109.16293 * 179.15622 * 9 7 2 12 12 C 1.50749 * 108.03619 * 175.36240 * 11 9 7 13 13 N 1.32383 * 129.98756 * 153.84878 * 12 11 9 14 14 C 1.31166 * 108.85208 * 180.29475 * 13 12 11 15 15 O 1.34063 * 109.33396 * 359.95238 * 14 13 12 16 16 C 1.34126 * 107.44507 * 359.84255 * 15 14 13 17 17 C 1.41108 * 130.80864 * 180.68430 * 16 15 14 18 18 O 1.21417 * 120.95542 * 357.51143 * 17 16 15 19 19 C 1.51305 * 117.91429 * 177.44335 * 17 16 15 20 20 H 0.96999 * 120.00586 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.74722 * 294.99766 * 11 9 7 22 22 H 1.08998 * 109.74965 * 55.72297 * 11 9 7 23 23 H 1.08004 * 125.32917 * 179.97438 * 14 13 12 24 24 H 1.09002 * 109.36750 * 271.78572 * 19 17 16 25 25 H 1.09001 * 109.36176 * 152.04600 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6207 -2.5515 -0.8872 11 6 2.2542 -3.6599 -0.0202 12 6 1.4799 -4.9481 0.0961 13 7 1.7884 -6.1666 -0.3194 14 6 0.8096 -6.9817 -0.0063 15 8 -0.1550 -6.2957 0.6233 16 6 0.2461 -5.0183 0.7023 17 6 -0.3783 -3.8893 1.2738 18 8 -1.4834 -3.9711 1.7700 19 6 0.3731 -2.5762 1.2496 20 1 -0.4851 0.8400 -0.0004 21 1 2.8115 -3.6484 -0.9569 22 1 2.9426 -3.5668 0.8198 23 1 0.7848 -8.0398 -0.2216 24 1 1.0007 -2.5025 2.1378 25 1 -0.3401 -1.7519 1.2416 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259885382.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = -41.095549 kcal Electronic energy + Delta-G solvation = -13244.321844 eV Core-core repulsion = 10802.609560 eV Total energy + Delta-G solvation = -2441.712283 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.63556 -40.36036 -37.80425 -35.79482 -33.98239 -30.87604 -29.75453 -27.18207 -24.62043 -23.38508 -22.50516 -20.30367 -18.75219 -18.22862 -17.74291 -16.96275 -16.70381 -16.10271 -15.58463 -15.24655 -14.74808 -14.44509 -13.94901 -13.37962 -12.89463 -12.56442 -12.39118 -12.34427 -12.03401 -11.74406 -11.53004 -11.30330 -10.75267 -10.48408 -9.92177 -8.12920 -6.28036 -0.52930 1.30321 1.47539 1.50842 1.55701 1.61870 1.77444 2.45613 3.05405 3.16499 3.50897 3.68167 4.05139 4.38937 4.44835 4.51406 4.68656 4.80586 4.92759 5.15557 5.23081 5.54559 5.72042 5.90783 6.21074 6.26169 6.59492 6.83692 7.43115 8.93417 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.053785 B = 0.009882 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.466132 B = 2832.758493 C = 3255.352433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.054 3.946 10 H 0.004 0.996 11 C -0.036 4.036 12 C 0.098 3.902 13 N -0.516 5.516 14 C 0.224 3.776 15 O -0.183 6.183 16 C -0.189 4.189 17 C 0.434 3.566 18 O -0.508 6.508 19 C -0.134 4.134 20 H 0.264 0.736 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.318 0.682 24 H 0.099 0.901 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -9.838 0.198 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.035 3.965 10 H 0.022 0.978 11 C -0.073 4.073 12 C -0.029 4.029 13 N -0.244 5.244 14 C 0.003 3.997 15 O -0.069 6.069 16 C -0.242 4.242 17 C 0.317 3.683 18 O -0.389 6.389 19 C -0.172 4.172 20 H 0.073 0.927 21 H 0.111 0.889 22 H 0.122 0.878 23 H 0.332 0.668 24 H 0.117 0.883 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.168 -9.983 0.156 10.819 hybrid contribution -0.662 1.004 0.228 1.224 sum 3.506 -8.978 0.383 9.646 Atomic orbital electron populations 1.69970 1.07546 1.27668 1.50864 1.25799 0.95523 1.02835 0.94373 0.85443 0.79399 0.79219 0.77229 1.18270 1.21259 1.20975 1.21452 0.93847 0.90260 1.50900 0.90638 1.18682 0.92386 0.93240 0.92188 0.97790 1.20482 0.97285 0.85251 1.04278 1.23006 0.92367 0.95199 0.92282 1.69994 1.29309 1.01154 1.23941 1.30200 0.79456 1.01526 0.88538 1.84340 1.44299 1.18484 1.59742 1.22379 1.00778 0.85360 1.15682 1.21334 0.85405 0.88631 0.72919 1.90488 1.21206 1.87779 1.39413 1.22145 1.01051 0.91816 1.02195 0.92707 0.88928 0.87807 0.66770 0.88283 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.00 11.31 21.45 0.24 -50.76 15 2 C 0.01 0.71 5.30 84.66 0.45 1.16 15 3 Si 0.96 40.74 29.54 68.60 2.03 42.77 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.29 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 7 C -0.53 -26.05 8.54 25.60 0.22 -25.83 15 8 H 0.08 3.52 7.74 -2.91 -0.02 3.49 15 9 C 0.05 2.51 2.08 -11.43 -0.02 2.49 15 10 H 0.00 0.21 8.14 -2.39 -0.02 0.19 15 11 C -0.04 -1.34 5.51 30.01 0.17 -1.17 15 12 C 0.10 3.59 7.10 42.35 0.30 3.89 15 13 N -0.52 -16.03 11.24 -301.81 -3.39 -19.42 15 14 C 0.22 5.28 13.21 130.34 1.72 7.00 15 15 O -0.18 -6.11 10.78 2.71 0.03 -6.08 15 16 C -0.19 -7.53 7.07 22.83 0.16 -7.37 15 17 C 0.43 19.71 6.91 26.58 0.18 19.89 15 18 O -0.51 -25.53 17.90 -2.26 -0.04 -25.57 15 19 C -0.13 -6.23 5.12 30.00 0.15 -6.08 15 20 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 21 H 0.09 3.30 8.14 -2.38 -0.02 3.28 15 22 H 0.10 3.55 8.14 -2.39 -0.02 3.53 15 23 H 0.32 2.48 8.06 -2.91 -0.02 2.45 15 24 H 0.10 4.23 8.14 -2.39 -0.02 4.22 15 25 H 0.10 5.42 6.06 -2.39 -0.01 5.41 15 Total: -1.00 -65.13 225.64 3.41 -61.72 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.21 Total: 3.35 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 3.33 Total: -6.01 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -3.15 Total: -70.18 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.01 Total: -31.65 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -65.13 3.41 -61.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259885382.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.626 kcal (2) G-P(sol) polarization free energy of solvation -65.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds