Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47310 * 300.00100 * 3 2 1 6 6 H 1.48497 * 109.47057 * 60.00217 * 3 2 1 7 7 C 1.37878 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47189 * 179.97438 * 10 9 7 12 12 N 1.30340 * 127.30407 * 270.33042 * 11 10 9 13 13 O 1.20870 * 112.68981 * 180.02562 * 12 11 10 14 14 C 1.34220 * 113.05358 * 359.77582 * 13 12 11 15 15 O 1.33956 * 147.28695 * 180.02562 * 14 13 12 16 16 C 1.34574 * 111.11855 * 180.02562 * 15 14 13 17 17 C 1.34170 * 109.54972 * 359.97438 * 16 15 14 18 18 C 1.39235 * 105.43002 * 0.02562 * 14 13 12 19 19 H 0.96996 * 120.00319 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46772 * 59.99832 * 9 7 2 21 21 H 1.08999 * 109.46307 * 299.99878 * 9 7 2 22 22 H 1.09006 * 109.47037 * 59.99720 * 10 9 7 23 23 H 1.08999 * 109.47080 * 299.99920 * 10 9 7 24 24 H 1.07999 * 125.22753 * 179.97438 * 16 15 14 25 25 H 1.07999 * 126.96202 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4993 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 7 1.0911 -5.6485 1.0345 13 8 0.5084 -6.6625 0.7291 14 6 0.4133 -6.8345 -0.5986 15 8 -0.0243 -7.5993 -1.6076 16 6 0.2917 -7.0583 -2.7985 17 6 0.9541 -5.9072 -2.6072 18 6 1.0503 -5.7318 -1.1616 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5575 0.8880 22 1 2.8712 -3.6048 0.8891 23 1 2.8725 -3.6040 -0.8909 24 1 0.0494 -7.4850 -3.7606 25 1 1.3381 -5.2447 -3.3687 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907683.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = 82.944527 kcal Electronic energy + Delta-G solvation = -12738.165357 eV Core-core repulsion = 10301.831855 eV Total energy + Delta-G solvation = -2436.333502 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.52495 -41.81514 -35.04309 -33.08040 -31.97535 -30.32061 -29.75952 -25.68959 -23.52151 -22.00298 -21.65060 -19.91653 -17.84551 -17.44612 -17.16922 -16.23031 -15.29286 -14.69737 -14.49667 -13.23527 -13.08064 -12.97161 -12.31884 -11.96587 -11.46595 -11.22232 -10.90928 -10.74949 -10.42255 -9.95331 -9.70466 -9.20532 -8.95320 -8.52938 -8.40649 -6.04780 -4.08708 1.16278 1.64913 1.77055 2.83319 3.29204 3.36694 3.40647 4.07952 4.36818 4.43418 4.53808 4.85931 5.31341 5.38585 5.44597 5.59789 6.11086 6.26710 6.36009 6.46080 6.83198 6.86004 7.59146 7.68242 7.92855 8.30899 8.52697 8.97573 9.55754 11.06615 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.056972 B = 0.007060 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.353859 B = 3965.009289 C = 4161.306376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.042 4.042 11 C 0.117 3.883 12 N -0.344 5.344 13 O 0.118 5.882 14 C 0.081 3.919 15 O -0.146 6.146 16 C -0.030 4.030 17 C -0.135 4.135 18 C -0.250 4.250 19 H 0.261 0.739 20 H 0.021 0.979 21 H 0.020 0.980 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.222 0.778 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -12.443 -5.764 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.081 4.081 11 C -0.046 4.046 12 N -0.055 5.055 13 O 0.056 5.944 14 C -0.027 4.027 15 O -0.044 6.044 16 C -0.094 4.094 17 C -0.155 4.155 18 C -0.254 4.254 19 H 0.071 0.929 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.238 0.762 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.197 -12.490 -4.451 13.313 hybrid contribution 0.345 1.065 -0.837 1.398 sum 1.542 -11.424 -5.288 12.683 Atomic orbital electron populations 1.69982 1.06138 1.26685 1.50392 1.25022 0.94850 0.99367 0.95103 0.86486 0.80085 0.83528 0.77623 1.19618 1.20964 1.20951 1.21198 0.93142 0.90555 1.51230 0.92237 1.19086 0.93620 0.90151 0.97938 1.20445 0.98019 0.86882 1.02726 1.24045 0.97515 0.97664 0.85418 1.73678 1.14609 0.96671 1.20541 1.85001 1.60478 1.34625 1.14252 1.22187 1.01119 0.92612 0.86760 1.83621 1.65131 1.44175 1.11502 1.24208 1.03739 0.95752 0.85745 1.21673 1.02905 0.98202 0.92718 1.21976 1.09711 0.98267 0.95485 0.92913 0.96093 0.96142 0.90655 0.90246 0.76209 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.03 0.79 4.96 -27.88 -0.14 0.65 15 10 C -0.04 -0.90 5.77 -27.89 -0.16 -1.06 15 11 C 0.12 2.36 6.80 -80.23 -0.55 1.81 15 12 N -0.34 -6.94 12.01 34.70 0.42 -6.52 15 13 O 0.12 2.16 11.11 -3.94 -0.04 2.11 15 14 C 0.08 1.38 9.73 31.10 0.30 1.68 15 15 O -0.15 -2.05 10.54 -14.76 -0.16 -2.21 15 16 C -0.03 -0.33 12.01 29.30 0.35 0.02 15 17 C -0.13 -1.85 11.12 -37.93 -0.42 -2.28 15 18 C -0.25 -4.49 7.66 -103.45 -0.79 -5.28 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.07 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 24 H 0.22 1.22 8.06 -52.49 -0.42 0.80 15 25 H 0.17 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 235.15 15.07 3.54 3.54 Total: -1.00 -31.78 235.15 -4.42 -36.19 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -2.08 Total: -5.50 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.82 Total: -17.86 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 1.15 Total: -32.70 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -0.20 Total: -0.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.78 -4.42 -36.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907683.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.137 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds