Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47310 * 300.00100 * 3 2 1 6 6 H 1.48497 * 109.47057 * 60.00217 * 3 2 1 7 7 C 1.37878 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47189 * 179.97438 * 10 9 7 12 12 N 1.30340 * 127.30407 * 270.33042 * 11 10 9 13 13 O 1.20870 * 112.68981 * 180.02562 * 12 11 10 14 14 C 1.34220 * 113.05358 * 359.77582 * 13 12 11 15 15 O 1.33956 * 147.28695 * 180.02562 * 14 13 12 16 16 C 1.34574 * 111.11855 * 180.02562 * 15 14 13 17 17 C 1.34170 * 109.54972 * 359.97438 * 16 15 14 18 18 C 1.39235 * 105.43002 * 0.02562 * 14 13 12 19 19 H 0.96996 * 120.00319 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46772 * 59.99832 * 9 7 2 21 21 H 1.08999 * 109.46307 * 299.99878 * 9 7 2 22 22 H 1.09006 * 109.47037 * 59.99720 * 10 9 7 23 23 H 1.08999 * 109.47080 * 299.99920 * 10 9 7 24 24 H 1.07999 * 125.22753 * 179.97438 * 16 15 14 25 25 H 1.07999 * 126.96202 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4993 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 7 1.0911 -5.6485 1.0345 13 8 0.5084 -6.6625 0.7291 14 6 0.4133 -6.8345 -0.5986 15 8 -0.0243 -7.5993 -1.6076 16 6 0.2917 -7.0583 -2.7985 17 6 0.9541 -5.9072 -2.6072 18 6 1.0503 -5.7318 -1.1616 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5575 0.8880 22 1 2.8712 -3.6048 0.8891 23 1 2.8725 -3.6040 -0.8909 24 1 0.0494 -7.4850 -3.7606 25 1 1.3381 -5.2447 -3.3687 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907683.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = 63.135142 kcal Electronic energy + Delta-G solvation = -12739.024357 eV Core-core repulsion = 10301.831855 eV Total energy + Delta-G solvation = -2437.192501 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.93744 -42.99102 -36.76183 -34.93236 -33.35781 -32.06460 -31.07899 -27.64329 -24.93444 -23.48841 -23.29376 -21.30244 -19.25560 -18.81007 -18.59550 -18.14061 -16.58097 -16.46002 -15.86753 -15.10861 -14.78043 -14.19802 -14.07913 -13.40097 -13.19980 -12.98858 -12.66444 -12.52990 -12.11188 -11.80426 -11.43823 -11.27859 -10.60704 -10.41994 -9.69935 -8.22985 -6.35911 -0.06866 0.34338 0.53094 1.41812 1.42507 1.55083 1.57275 2.40280 2.96200 3.08099 3.11096 3.20335 3.50448 4.17108 4.33746 4.49282 4.59746 4.64078 4.79717 5.03331 5.29490 5.41042 5.54267 5.72727 5.75589 6.13488 6.79772 7.09891 7.34314 8.89788 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.056972 B = 0.007060 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.353859 B = 3965.009289 C = 4161.306376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.039 3.961 10 C -0.028 4.028 11 C 0.086 3.914 12 N -0.362 5.362 13 O 0.121 5.879 14 C 0.068 3.932 15 O -0.140 6.140 16 C 0.014 3.986 17 C -0.167 4.167 18 C -0.268 4.268 19 H 0.265 0.735 20 H -0.004 1.004 21 H -0.017 1.017 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.285 0.715 25 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -12.977 -7.537 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.001 3.999 10 C -0.066 4.066 11 C -0.076 4.076 12 N -0.072 5.072 13 O 0.057 5.943 14 C -0.040 4.040 15 O -0.039 6.039 16 C -0.050 4.050 17 C -0.187 4.187 18 C -0.273 4.273 19 H 0.073 0.927 20 H 0.014 0.986 21 H 0.001 0.999 22 H 0.095 0.905 23 H 0.115 0.885 24 H 0.300 0.700 25 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.936 -13.027 -6.223 14.567 hybrid contribution 0.037 1.104 -0.365 1.163 sum 1.972 -11.923 -6.588 13.765 Atomic orbital electron populations 1.70126 1.08100 1.27933 1.51396 1.26039 0.95733 1.03654 0.94395 0.85290 0.79193 0.78183 0.77723 1.18057 1.20179 1.20663 1.21639 0.93900 0.91440 1.51001 0.91074 1.18872 0.93880 0.92250 0.94882 1.20132 0.96933 0.85861 1.03651 1.23947 0.98858 0.97929 0.86915 1.73664 1.14820 0.97255 1.21503 1.84879 1.60052 1.33918 1.15441 1.22175 1.02072 0.93310 0.86405 1.83707 1.64697 1.43838 1.11639 1.25445 0.99526 0.93896 0.86091 1.22060 1.05356 1.00312 0.90943 1.22417 1.09551 0.97910 0.97422 0.92666 0.98561 0.99870 0.90461 0.88498 0.70008 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.29 21.45 0.28 -57.32 15 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 15 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 15 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.54 -30.75 9.11 25.60 0.23 -30.51 15 8 H 0.07 3.78 7.74 -2.91 -0.02 3.75 15 9 C 0.04 2.14 4.96 29.85 0.15 2.29 15 10 C -0.03 -1.20 5.77 29.85 0.17 -1.03 15 11 C 0.09 3.55 6.80 44.72 0.30 3.85 15 12 N -0.36 -15.07 12.01 -44.45 -0.53 -15.60 15 13 O 0.12 4.48 11.11 89.73 1.00 5.48 15 14 C 0.07 2.28 9.73 68.06 0.66 2.94 15 15 O -0.14 -3.56 10.54 17.91 0.19 -3.37 15 16 C 0.01 0.24 12.01 66.89 0.80 1.04 15 17 C -0.17 -4.18 11.12 23.34 0.26 -3.92 15 18 C -0.27 -9.53 7.66 -19.10 -0.15 -9.67 15 19 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 20 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 21 H -0.02 -1.05 8.14 -2.39 -0.02 -1.06 15 22 H 0.08 3.26 8.14 -2.38 -0.02 3.24 15 23 H 0.10 3.80 8.14 -2.39 -0.02 3.78 15 24 H 0.28 1.16 8.06 -2.91 -0.02 1.14 15 25 H 0.18 3.75 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -71.12 235.15 7.06 -64.05 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: 1.20 Total: -4.59 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 2.90 Total: -34.57 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -0.25 Total: -72.92 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 1.19 Total: 2.11 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.12 7.06 -64.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907683.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.187 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds