Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.35109 * 125.64465 * 2 1 4 4 C 1.34581 * 108.77904 * 180.02562 * 3 2 1 5 5 N 1.32285 * 145.15637 * 180.02562 * 4 3 2 6 6 N 1.28613 * 110.24326 * 179.72237 * 5 4 3 7 7 C 1.33285 * 109.59923 * 0.45225 * 6 5 4 8 8 C 1.39765 * 126.64644 * 179.82276 * 7 6 5 9 9 H 1.07999 * 120.00149 * 179.69068 * 8 7 6 10 10 C 1.40117 * 119.99668 * 359.68551 * 8 7 6 11 11 N 1.30815 * 120.00066 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99650 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 90.00304 * 12 10 8 14 14 H 1.48499 * 109.47026 * 210.00151 * 12 10 8 15 15 H 1.48492 * 109.47108 * 330.00188 * 12 10 8 16 16 N 1.36224 * 107.45736 * 359.97438 * 4 3 2 17 17 C 1.33063 * 125.64853 * 180.02562 * 2 1 3 18 18 C 1.50698 * 126.17306 * 0.02562 * 17 2 1 19 19 H 1.08994 * 109.47243 * 359.97078 * 1 2 3 20 20 H 1.08992 * 109.46925 * 119.97607 * 1 2 3 21 21 H 1.08999 * 109.46560 * 239.97217 * 1 2 3 22 22 H 0.97000 * 120.00493 * 179.97438 * 11 10 8 23 23 H 1.08996 * 109.47504 * 269.94999 * 18 17 2 24 24 H 1.08999 * 109.46946 * 29.94606 * 18 17 2 25 25 H 1.08999 * 109.47523 * 149.94323 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2944 1.0980 0.0000 4 6 3.5823 0.7075 -0.0006 5 7 4.8406 1.1158 -0.0006 6 7 5.6363 0.1054 0.0044 7 6 4.9265 -1.0227 -0.0020 8 6 5.4314 -2.3260 -0.0030 9 1 4.7543 -3.1674 -0.0034 10 6 6.8160 -2.5409 -0.0035 11 7 7.6361 -1.5217 -0.0025 12 14 7.4907 -4.2827 -0.0040 13 1 7.6691 -4.7440 -1.4043 14 1 8.8004 -4.3065 0.6956 15 1 6.5392 -5.1824 0.6961 16 7 3.5964 -0.6547 -0.0003 17 6 2.2826 -1.0813 -0.0005 18 6 1.8124 -2.5130 -0.0017 19 1 -0.3633 1.0276 0.0005 20 1 -0.3633 -0.5134 -0.8901 21 1 -0.3632 -0.5143 0.8898 22 1 8.5946 -1.6704 -0.0025 23 1 1.6995 -2.8593 1.0256 24 1 0.8532 -2.5800 -0.5151 25 1 2.5443 -3.1354 -0.5165 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915130.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = 68.064378 kcal Electronic energy + Delta-G solvation = -13297.874522 eV Core-core repulsion = 10893.188519 eV Total energy + Delta-G solvation = -2404.686003 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.62179 -41.07876 -36.12487 -35.61762 -33.36625 -31.30129 -29.99688 -27.79175 -26.52688 -23.52766 -22.63717 -21.69322 -19.25457 -18.25321 -18.19881 -16.86067 -16.18763 -15.21274 -15.08662 -14.78063 -14.40633 -14.35540 -13.53690 -13.41435 -13.28846 -13.00851 -12.91512 -12.78875 -12.17198 -12.00482 -11.91228 -11.33276 -10.86108 -9.83755 -9.20332 -8.62334 -6.65527 0.59859 1.21861 1.29775 1.41099 1.58696 1.60344 2.00370 2.24263 2.26144 3.20289 3.59735 3.78913 4.26163 4.29427 4.60795 4.66983 4.76048 4.78985 4.85653 5.06078 5.12549 5.19647 5.31061 5.69387 6.09139 6.20858 6.65380 6.81622 8.30746 8.40901 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.046881 B = 0.011057 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.118764 B = 2531.720929 C = 3108.393186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.021 4.021 3 O -0.197 6.197 4 C 0.210 3.790 5 N -0.317 5.317 6 N -0.359 5.359 7 C 0.320 3.680 8 C -0.461 4.461 9 H 0.105 0.895 10 C 0.026 3.974 11 N -0.787 5.787 12 Si 1.014 2.986 13 H -0.258 1.258 14 H -0.267 1.267 15 H -0.246 1.246 16 N -0.500 5.500 17 C -0.018 4.018 18 C -0.071 4.071 19 H 0.089 0.911 20 H 0.115 0.885 21 H 0.114 0.886 22 H 0.290 0.710 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 -7.498 -0.024 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 O -0.094 6.094 4 C -0.090 4.090 5 N -0.173 5.173 6 N -0.204 5.204 7 C 0.079 3.921 8 C -0.501 4.501 9 H 0.123 0.877 10 C -0.195 4.195 11 N -0.412 5.412 12 Si 0.832 3.168 13 H -0.182 1.182 14 H -0.192 1.192 15 H -0.169 1.169 16 N -0.200 5.200 17 C -0.116 4.116 18 C -0.128 4.128 19 H 0.108 0.892 20 H 0.133 0.867 21 H 0.132 0.868 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.143 0.857 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.608 -6.251 -0.014 13.184 hybrid contribution -0.102 -0.779 -0.006 0.786 sum -11.711 -7.030 -0.019 13.659 Atomic orbital electron populations 1.20585 0.78714 1.05771 1.06041 1.23236 0.96402 0.80187 1.07261 1.84294 1.09799 1.32790 1.82510 1.24397 0.88485 0.81776 1.14317 1.74626 0.91766 1.25645 1.25267 1.75741 1.18850 0.93030 1.32729 1.21363 0.74607 0.97274 0.98882 1.18680 0.93772 0.88316 1.49337 0.87701 1.27103 0.95894 1.04732 0.91772 1.70113 1.05186 1.35016 1.30922 0.84748 0.78169 0.74137 0.79781 1.18246 1.19182 1.16890 1.45443 1.06984 1.08973 1.58609 1.21226 0.79520 1.00291 1.10596 1.20435 1.02818 0.85222 1.04309 0.89163 0.86671 0.86810 0.89959 0.89211 0.85714 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 9.83 71.24 0.70 -0.27 15 2 C -0.02 -0.74 7.28 24.53 0.18 -0.56 15 3 O -0.20 -9.08 10.74 -13.33 -0.14 -9.22 15 4 C 0.21 11.78 9.89 179.36 1.77 13.56 15 5 N -0.32 -20.03 12.25 -173.50 -2.13 -22.15 15 6 N -0.36 -23.63 10.51 -55.14 -0.58 -24.21 15 7 C 0.32 19.30 7.73 133.29 1.03 20.33 15 8 C -0.46 -25.27 9.44 23.10 0.22 -25.05 15 9 H 0.11 5.10 7.35 -2.91 -0.02 5.08 15 10 C 0.03 1.33 5.50 85.30 0.47 1.80 15 11 N -0.79 -44.83 11.94 21.86 0.26 -44.57 15 12 Si 1.01 37.24 29.56 68.60 2.03 39.27 15 13 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 14 H -0.27 -9.45 7.11 99.48 0.71 -8.75 15 15 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 16 N -0.50 -26.65 3.65 -454.82 -1.66 -28.31 15 17 C -0.02 -0.71 7.18 40.41 0.29 -0.42 15 18 C -0.07 -1.90 10.18 71.24 0.73 -1.17 15 19 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.11 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.29 14.72 8.30 -92.71 -0.77 13.95 15 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.12 2.08 7.82 -2.39 -0.02 2.06 15 25 H 0.06 1.86 7.65 -2.39 -0.02 1.84 15 Total: -1.00 -80.78 230.69 4.38 -76.40 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.22 Total: 4.59 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.38 Total: 8.21 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -4.11 Total: -119.25 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.14 Total: -9.22 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -80.78 4.38 -76.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915130.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.469 kcal (2) G-P(sol) polarization free energy of solvation -80.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds