Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46812 * 269.99591 * 3 2 1 5 5 H 1.48498 * 109.47181 * 29.99788 * 3 2 1 6 6 H 1.48505 * 109.46812 * 149.99782 * 3 2 1 7 7 C 1.37881 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99864 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46983 * 179.97438 * 10 9 7 12 12 N 1.30541 * 125.19350 * 305.24002 * 11 10 9 13 13 C 1.34089 * 109.82440 * 180.14151 * 12 11 10 14 14 O 1.34868 * 145.54233 * 180.02562 * 13 12 11 15 15 N 1.41568 * 108.11240 * 179.62763 * 14 13 12 16 16 C 1.30219 * 108.76877 * 0.02683 * 15 14 13 17 17 C 1.38625 * 107.31559 * 359.65544 * 13 12 11 18 18 N 1.35025 * 125.18976 * 124.99744 * 11 10 9 19 19 H 0.97005 * 126.46143 * 0.02562 * 18 11 10 20 20 H 0.97004 * 119.99999 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47097 * 59.99303 * 9 7 2 22 22 H 1.09000 * 109.46764 * 299.99334 * 9 7 2 23 23 H 1.08995 * 109.47093 * 59.99195 * 10 9 7 24 24 H 1.09000 * 109.46777 * 299.99397 * 10 9 7 25 25 H 1.08000 * 125.82773 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 7 0.5828 -5.3107 0.8729 13 6 0.1160 -6.5343 0.5849 14 8 -0.7404 -7.5113 0.9467 15 7 -0.6088 -8.5761 0.0231 16 6 0.2918 -8.2551 -0.8610 17 6 0.7802 -6.9727 -0.5501 18 7 1.6505 -5.9578 -0.9026 19 1 2.2605 -5.9577 -1.6568 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6043 0.8904 24 1 2.8719 -3.6044 -0.8895 25 1 0.6095 -8.8683 -1.6913 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259916864.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = 81.194740 kcal Electronic energy + Delta-G solvation = -12599.006157 eV Core-core repulsion = 10194.889530 eV Total energy + Delta-G solvation = -2404.116627 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.05279 -40.93668 -35.88423 -34.86002 -33.48285 -33.31523 -29.78407 -27.27187 -24.01429 -23.15847 -23.12527 -21.54998 -19.32445 -18.51618 -18.27890 -17.67043 -16.47768 -15.47022 -15.16163 -14.92101 -14.63281 -14.50473 -14.17132 -13.27538 -12.94838 -12.83678 -12.76157 -12.45566 -11.94372 -11.65831 -11.25532 -11.19517 -10.76294 -10.51836 -9.54990 -8.15410 -6.27583 -0.20140 0.79850 1.31639 1.46201 1.48060 1.58481 1.64791 1.77711 2.45952 2.88684 3.19521 3.44240 3.64174 3.83160 4.23667 4.53595 4.63839 4.75574 4.99335 5.06814 5.53113 5.67503 5.87152 6.02802 6.19000 6.25940 6.61278 6.91129 7.42540 8.96767 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.085349 B = 0.006227 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.987671 B = 4495.529951 C = 4670.866404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.035 3.965 10 C -0.026 4.026 11 C 0.324 3.676 12 N -0.516 5.516 13 C 0.166 3.834 14 O -0.103 6.103 15 N -0.316 5.316 16 C 0.173 3.827 17 C -0.148 4.148 18 N -0.518 5.518 19 H 0.450 0.550 20 H 0.262 0.738 21 H -0.010 1.010 22 H -0.006 1.006 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -12.991 -6.030 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.003 4.003 10 C -0.065 4.065 11 C 0.058 3.942 12 N -0.247 5.247 13 C -0.017 4.017 14 O -0.103 6.103 15 N -0.067 5.067 16 C -0.023 4.023 17 C -0.264 4.264 18 N -0.130 5.130 19 H 0.294 0.706 20 H 0.070 0.930 21 H 0.008 0.992 22 H 0.013 0.987 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.983 -13.402 -4.847 15.457 hybrid contribution 0.692 1.069 -0.948 1.588 sum 6.675 -12.333 -5.795 15.174 Atomic orbital electron populations 1.70142 1.08157 1.27717 1.51655 1.26025 0.95613 1.03637 0.94835 0.85407 0.78712 0.78223 0.78435 1.19683 1.21714 1.18095 1.21672 0.94130 0.91353 1.50434 0.90361 1.18870 0.93997 0.91967 0.95469 1.20466 0.96802 0.83739 1.05468 1.24251 0.93271 0.92471 0.84252 1.69598 1.14910 1.09863 1.30370 1.20813 0.94495 0.91638 0.94792 1.89176 1.52134 1.22437 1.46564 1.80374 1.20873 1.03125 1.02330 1.24502 0.89531 0.90320 0.97930 1.20672 1.05736 0.96730 1.03240 1.42185 1.32824 1.11826 1.26147 0.70597 0.92966 0.99163 0.98747 0.87929 0.86551 0.71884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 13.29 21.45 0.28 -56.50 15 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 15 3 Si 0.97 42.47 29.54 68.60 2.03 44.50 15 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 15 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 7 C -0.54 -28.35 9.11 25.60 0.23 -28.12 15 8 H 0.08 3.73 7.74 -2.91 -0.02 3.71 15 9 C 0.04 1.76 4.91 29.85 0.15 1.90 15 10 C -0.03 -0.90 5.78 29.85 0.17 -0.73 15 11 C 0.32 11.11 7.38 138.12 1.02 12.13 15 12 N -0.52 -21.70 11.15 -299.11 -3.34 -25.04 15 13 C 0.17 6.32 9.37 84.44 0.79 7.11 15 14 O -0.10 -3.88 12.15 28.92 0.35 -3.53 15 15 N -0.32 -9.11 12.90 -56.79 -0.73 -9.84 15 16 C 0.17 3.50 12.04 85.53 1.03 4.53 15 17 C -0.15 -4.07 8.13 38.82 0.32 -3.76 15 18 N -0.52 -12.70 6.21 -179.50 -1.12 -13.81 15 19 H 0.45 6.43 8.96 -92.70 -0.83 5.60 15 20 H 0.26 15.00 8.31 -92.71 -0.77 14.23 15 21 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 15 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 23 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 24 H 0.12 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.27 1.67 8.06 -2.91 -0.02 1.64 15 Total: -1.00 -74.94 234.39 2.04 -72.89 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: 0.40 Total: -2.00 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.17 Total: -6.66 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.90 Total: -105.19 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.35 Total: -3.53 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.94 2.04 -72.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259916864.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.087 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds